Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b24
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.37 
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    26   3.5  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   3.5  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   4.6  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   6.1  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   6.1  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   6.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   6.1  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   6.1  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 53  PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIVQVTTY 202
           P     T    ++++QR  + P  VL    E  VC P+PF   ++    Y
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAY 264



 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 466 EVKECNDLDEEVIIVICVY*LVNIDSTNLPTWCISEP 356
           E+   NDLDE+VII  C     +        WC+SEP
Sbjct: 441 ELVPSNDLDEQVIINSCKT-FTHKAMVFDVKWCVSEP 476


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 393 IQQTYQHGVFQNQFIVDDVSKII 325
           I QTYQH +  + FI   V KI+
Sbjct: 331 ILQTYQHDILDDDFIRQYVDKIL 353


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 357 QFIVDDVSKIIKEAIENSIGGTAYQH 280
           +F   D+S+ +  AI N+IG  AY H
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLH 331


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 337  HVVDNELVLKYTMLVSLLNQYLP---TNTHK 420
            +++ NE+VLK+T   S+L   LP    +THK
Sbjct: 984  YIIMNEIVLKHTKNTSVLFTVLPAPLADTHK 1014


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 144 SCYWDNTTDGSCTVRWENKTMYCIVSVFGL 55
           SCY D        +RW    ++CI+ VF +
Sbjct: 63  SCYPDGRISTRSKLRWPLLIIWCILIVFAI 92


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 144 SCYWDNTTDGSCTVRWENKTMYCIVSVFGL 55
           SCY D        +RW    ++CI+ VF +
Sbjct: 83  SCYPDGRISTRSKLRWPLLIIWCILIVFAI 112


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 144 SCYWDNTTDGSCTVRWENKTMYCIVSVFGL 55
           SCY D        +RW    ++CI+ VF +
Sbjct: 63  SCYPDGRISTRSKLRWPLLIIWCILIVFAI 92


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 145 RTCMQSCTILLQYCAGHYIFVWFL 216
           RT + SC ++  Y   +YIF  FL
Sbjct: 350 RTILGSCVLIFTYFMSYYIFSNFL 373


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 144 SCYWDNTTDGSCTVRWENKTMYCIVSVFGL 55
           SCY D        +RW    ++CI+ VF +
Sbjct: 63  SCYPDGRISTRSKLRWPLLIIWCILIVFAI 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,517
Number of Sequences: 5004
Number of extensions: 39720
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)