Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b24
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   1.5  
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542...    29   2.0  
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    28   3.5  
07_03_0486 - 18634813-18635168,18635258-18638726                       28   4.6  
11_01_0782 + 6543906-6544702,6545717-6547850                           27   6.0  
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968...    27   6.0  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    27   6.0  

>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 301 WRHCLSTQQCQPMDF 257
           W+HC++  QCQ +DF
Sbjct: 455 WQHCIAVAQCQALDF 469


>01_01_0703 -
           5425713-5425862,5426302-5426451,5426853-5426964,
           5427120-5427481,5427578-5427712,5427812-5427889,
           5427989-5428174,5428266-5428452,5428552-5428658,
           5428732-5428806,5428885-5429040,5429165-5429437,
           5429548-5429643,5429724-5429814,5429883-5430385
          Length = 886

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 135 NNKKNLYAVLHHSSAVLCRSLHICMVF 215
           +N+  L AV HH SA+LC SL    VF
Sbjct: 766 SNESILKAVWHHPSAILCCSLKAMPVF 792


>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 158 CIQVLLVIGITLLMAHARSVGRIKLCTALSQSLGLAYXHGFIIFIY 21
           C+++LL  GI L+  H   +GR K+   L  SL L   H  +  I+
Sbjct: 243 CLELLLQSGIELMGKHVTVIGRSKV-VGLPTSLLLQRHHATVSIIH 287


>07_03_0486 - 18634813-18635168,18635258-18638726
          Length = 1274

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 149 VLLVIGITLLMAHARSVGRIKLCTALSQSLG 57
           VLLVI + L+    R  G +  CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -3

Query: 475 KIMEVKECNDLDEEVIIVIC 416
           ++++++EC DLD++ +I +C
Sbjct: 564 RVLDLEECTDLDDDHLIQVC 583


>03_06_0741 +
           35893538-35895600,35896274-35896474,35896701-35896814,
           35897570-35897649,35897772-35897896,35898008-35898079
          Length = 884

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 164 APFFCSIVQVTTYLYGFCNLVNCPRHDSTTAE 259
           APF  S  Q+ +++    +L++CP H S+++E
Sbjct: 666 APFRASDSQLGSFISSRDDLLSCPNHSSSSSE 697


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -1

Query: 360 NQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTI 181
           N  I+D  +  ++E  +        QH N+  W+   +   +G LTKLQ   +Y V    
Sbjct: 615 NLKILDARTNFLEELPQGIQKLVKLQHLNLVLWSPLCMPKGIGNLTKLQTLTRYSVGSGN 674

Query: 180 LQKNGAGLH 154
              N A LH
Sbjct: 675 WHCNIAELH 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,114
Number of Sequences: 37544
Number of extensions: 244232
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)