Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b24
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    88   4e-18
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    61   5e-10
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    51   5e-07
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi...    27   9.5  
AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna ...    27   9.5  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
 Frame = -1

Query: 345 DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQ-K 172
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT + LQ  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 171 NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGLGI 49
           +G+GL+ S+  YW+  TD S   RWE KTM  IV VF + I
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYVFAIAI 106


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = -1

Query: 342 DVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQK-NG 166
           ++  II+++ ++ IG T Y    ++ W S ++++    L KL    K++V CTI  K + 
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 165 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVF 61
             + T++ C WD T D +    W +KT++  V VF
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQVF 160


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = -1

Query: 339 VSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTILQKNG 166
           V+ +I+E +   +G  T Y  +     +  +  S   +L  LQ P YKYV+   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 165 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSVFGL 55
            G  T+  C WD   DG  T R+   +++C V VF +
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAI 120


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 132 PNNKKNLYAVLHHSSAVL---CRSLHICMVFVT*STAPDMTQQLLKS 263
           P + K+LY V    +A++   C +LH C V+VT        Q L++S
Sbjct: 107 PEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQS 153


>Z99281-28|CAB16503.1|  633|Caenorhabditis elegans Hypothetical
           protein Y57G11C.1 protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 10  ILSQ*MNIINPXLYAKPKD*DNAVHSFILPTDRA*AISSVIPITRRTCMQSCTILLQY 183
           IL   +N+I P LY +       + SF +   RA  + ++I  +  TC  +C   +QY
Sbjct: 65  ILDCALNLIEPALYGQMMTNAIQMKSFDI-IKRACLLLALIQFSEATCKSACYFFMQY 121


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 252 VVESCLGQLTKLQKPYKYVVTC 187
           VV  C    TKL  PY YV++C
Sbjct: 378 VVFDCKSFFTKLFSPYAYVISC 399


>Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical
           protein R07E3.1b protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 315 IENSIGGTAYQHNNVNQWTSAVVESCL 235
           I+N  G   Y HN+++ WT    E  L
Sbjct: 72  IQNEHGSAEYGHNDMSDWTDEEFEKTL 98


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
           protein R07E3.1a protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 315 IENSIGGTAYQHNNVNQWTSAVVESCL 235
           I+N  G   Y HN+++ WT    E  L
Sbjct: 126 IQNEHGSAEYGHNDMSDWTDEEFEKTL 152


>AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi
           enabling proteinSID-1 protein.
          Length = 776

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 188 AQYCRRMVQDCIQVLLVIGITLLMAHARSVGRIKLCTALS 69
           A YC   + +CI  L+  G   ++   R   + KLC ALS
Sbjct: 662 ATYC--FIINCIMYLMYYGCMKVLHSERITSKAKLCGALS 699


>AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna
           interference defectiveprotein 1 protein.
          Length = 776

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 188 AQYCRRMVQDCIQVLLVIGITLLMAHARSVGRIKLCTALS 69
           A YC   + +CI  L+  G   ++   R   + KLC ALS
Sbjct: 662 ATYC--FIINCIMYLMYYGCMKVLHSERITSKAKLCGALS 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,210,269
Number of Sequences: 27780
Number of extensions: 234325
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)