Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b21
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   4.6  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    26   6.1  

>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 691 TTRQISQNS*KHIIL*SFYKYDCRMITLPSIYEVLKKN*SENLNNI 554
           T ++ S+N  + I   S   Y    ITLP   E +KK+  E L N+
Sbjct: 158 TLKRTSENRDREIARISQDVYTMSTITLPQSLEQIKKSQEEALQNL 203


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 134 IQCMLSNLRIVKTAL*TTFQYSI-VVSVVENMFLTNTV*CI*KKNQTVYNVNYSLNHFKD 310
           I CM   +++ +TA  T F   + V+S V   F +    C  K+  +   +++ +NHF +
Sbjct: 186 IDCMSHKIKLKETA--TGFYVILDVLSCVGRQFASVLEECFTKEISSA-GLDH-INHFSE 241

Query: 311 VAMFKLFLIYHRLYFTF*LEDDITND 388
           + M  + L+Y R Y ++     + ND
Sbjct: 242 IVMLGVDLLY-RDYVSYDTTISLKND 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,393
Number of Sequences: 5004
Number of extensions: 41479
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)