Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b18
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   7.4  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   9.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   9.7  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 46  IYMSSLANFFLDFCINFVAFLRTFNFNVSRINFIN*FVLYCNRFTIHFASACLGY 210
           + +S L   + DF ++    +R ++ +   I+F   F+L+  R +IH  S C  +
Sbjct: 364 LQLSQLYYKYNDFQLSAAYVIRGYSLSFEDISFKLKFLLFSFRLSIHDNSICFPF 418


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -2

Query: 639 YLRRMKPDELELLFRGYADLPARSLQENKES--SQIIFPFAQSVTKAIKQENVDHDKGMA 466
           Y+ R  PD++ LLF  Y  L A  + +  +S  +++       V ++         K   
Sbjct: 129 YISRSFPDQISLLFSRYCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQT 188

Query: 465 NFLH 454
            FLH
Sbjct: 189 QFLH 192


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 372 SVLAGA--STEQTEEIAVNDYDATVPEDLPDDEVPL 271
           SVLA    ++  T E  + DY + +PEDL    +PL
Sbjct: 244 SVLASLQLNSSNTPESLLIDYQSKIPEDLSSSLLPL 279


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 393 SREVSCRPVHLQRRISSRELDARNSPCPYRDPHF 494
           S + S    HLQ +I S E  + + P P R P F
Sbjct: 140 SSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSF 173


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67  NFFLDFCINFVAFLRTFNFNVSRINFIN*FVLY 165
           NF  D    F+ +   + FNV R + I  FVLY
Sbjct: 125 NFIADNYPWFLPYFDAYPFNVQRADVIRYFVLY 157


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 723 ETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKP 619
           E   VP  +  +RNS R  H       PYL+  +P
Sbjct: 90  ENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRP 124


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 28   SSKIQCIYMSSLANFFLDFCINFVAFLRTFNFNVSRINFI 147
            S++++C+   S+ N   D C  +V F   FN   S I+++
Sbjct: 1343 SAELECV--CSIFNIEKDICTKYVQFGHVFNLLHSIISYV 1380


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 345 QTEEIAVNDYDATVPE-DLP-DDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKS 172
           + EE  +N+  AT    D P  +E  L  ++Q+ +PP    +T+E     T   + N  S
Sbjct: 497 RVEEPLLNELSATASSRDKPAPNEYWLQMDIQLSVPPVFHMITSEGQGNCTDFTEGNQAS 556

Query: 171 IAIQHKLI 148
             + H L+
Sbjct: 557 EVLLHSLM 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,689
Number of Sequences: 5004
Number of extensions: 68389
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)