Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11b18
(817 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein. 33 1.2
BX537985-1|CAD97945.1| 1202|Homo sapiens hypothetical protein pr... 32 2.2
BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain cont... 32 2.2
AK001254-1|BAA91584.1| 636|Homo sapiens protein ( Homo sapiens ... 32 2.2
AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein. 32 2.2
AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein... 32 2.2
AB033038-1|BAA86526.2| 802|Homo sapiens KIAA1212 protein protein. 32 2.2
X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for ... 31 3.8
X04146-1|CAA27765.1| 1400|Homo sapiens protein ( Human mRNA frag... 31 3.8
M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor pro... 31 3.8
DQ501251-1|ABF68612.1| 360|Homo sapiens cyclon protein. 30 8.7
BC001378-1|AAH01378.1| 360|Homo sapiens coiled-coil domain cont... 30 8.7
AK025974-1|BAB15304.1| 360|Homo sapiens protein ( Homo sapiens ... 30 8.7
>M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein.
Length = 2074
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 807 SEDLVXSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHR 661
+++L GL + L+C+SM + PPG+V+H N +L R
Sbjct: 39 ADNLRAEGLECAKTCQNYDLECMSMGSVSGCLCPPGMVRHENRCVALER 87
>BX537985-1|CAD97945.1| 1202|Homo sapiens hypothetical protein
protein.
Length = 1202
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 325 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 382
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 383 QKGQLEDLEKMLKVEQE 399
>BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain
containing 88A protein.
Length = 1843
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 1150 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1207
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 1208 QKGQLEDLEKMLKVEQE 1224
>AK001254-1|BAA91584.1| 636|Homo sapiens protein ( Homo sapiens
cDNA FLJ10392 fis, clone NT2RM4000169, weakly similar to
INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1. ).
Length = 636
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 29 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 86
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 87 QKGQLEDLEKMLKVEQE 103
>AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein.
Length = 1870
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 1149 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1206
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 1207 QKGQLEDLEKMLKVEQE 1223
>AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein
protein.
Length = 1843
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 1150 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 1207
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 1208 QKGQLEDLEKMLKVEQE 1224
>AB033038-1|BAA86526.2| 802|Homo sapiens KIAA1212 protein protein.
Length = 802
Score = 32.3 bits (70), Expect = 2.2
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = -2
Query: 300 EDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RKMNSKSIAIQHKLIDEVYT*HVE 121
+ L D + +E+L+++ + + ES ++K G K K++ ++H+ +++ Y ++
Sbjct: 109 KSLYDSLIKDHEKLELLHERQASEY--ESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLK 166
Query: 120 VKGAQESYEINTKVEKE 70
KG E E KVE+E
Sbjct: 167 QKGQLEDLEKMLKVEQE 183
>X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for
pre-pro-von Willebrand factor. ).
Length = 2813
Score = 31.5 bits (68), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 807 SEDLVXSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHR 661
+++L GL + L+C+SM PPG+V+H N +L R
Sbjct: 778 ADNLRAEGLECTKTCQNYDLECMSMGCVSGCLCPPGMVRHENRCVALER 826
>X04146-1|CAA27765.1| 1400|Homo sapiens protein ( Human mRNA
fragment (5'terminus) for von Willebrand factor (vWF).
).
Length = 1400
Score = 31.5 bits (68), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 807 SEDLVXSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHR 661
+++L GL + L+C+SM PPG+V+H N +L R
Sbjct: 778 ADNLRAEGLECTKTCQNYDLECMSMGCVSGCLCPPGMVRHENRCVALER 826
>M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor
protein.
Length = 2813
Score = 31.5 bits (68), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 807 SEDLVXSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHR 661
+++L GL + L+C+SM PPG+V+H N +L R
Sbjct: 778 ADNLRAEGLECTKTCQNYDLECMSMGCVSGCLCPPGMVRHENRCVALER 826
>DQ501251-1|ABF68612.1| 360|Homo sapiens cyclon protein.
Length = 360
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 380
P + P+R +DL ++S + P S C P+P APKC+
Sbjct: 87 PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128
>BC001378-1|AAH01378.1| 360|Homo sapiens coiled-coil domain
containing 86 protein.
Length = 360
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 380
P + P+R +DL ++S + P S C P+P APKC+
Sbjct: 87 PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128
>AK025974-1|BAB15304.1| 360|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22321 fis, clone HRC05390. ).
Length = 360
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 PRSVEPRRPEDLLVQSHRNH*RLFPRSVLC*PRP---APKCT 380
P + P+R +DL ++S + P S C P+P APKC+
Sbjct: 87 PGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCS 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,559,719
Number of Sequences: 237096
Number of extensions: 2432113
Number of successful extensions: 7263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7263
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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