Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b18
         (817 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1690|AAF58387.1|  325|Drosophila melanogaster CG4734-PA...    31   1.9  
AE014298-1399|AAF46544.1| 4498|Drosophila melanogaster CG2989-PA...    30   4.4  
AE014296-2825|AAS64979.1| 1431|Drosophila melanogaster CG33256-P...    30   4.4  
AY069232-1|AAL39377.1|  523|Drosophila melanogaster GH27892p pro...    29   5.8  
AE014134-1536|AAF52692.2|  523|Drosophila melanogaster CG13091-P...    29   5.8  

>AE013599-1690|AAF58387.1|  325|Drosophila melanogaster CG4734-PA
           protein.
          Length = 325

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 PLTSTCHV*TSSINLCCIAIDLLFILRQPVLVTDDSAVTSSQ 238
           P     H+  +S  +C + ID    L QP L TDDS +T ++
Sbjct: 46  PRVCEYHIKATSKYVCQLRIDWAMTLAQPTLETDDSGLTYAE 87


>AE014298-1399|AAF46544.1| 4498|Drosophila melanogaster CG2989-PA
            protein.
          Length = 4498

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 363  AGASTEQTEEIAVNDYDATVPEDLPDDEV--PLNEELQIILPPRCDDVTAESSVTKT 199
            +  +TE+    A N + +T P  +P+DE    +N+  ++I+  R     AES    T
Sbjct: 1692 SSTTTEKLTRRAFNRFSSTTPAVVPEDETTSTVNQRRRVIVRNRISTTEAESEAQTT 1748


>AE014296-2825|AAS64979.1| 1431|Drosophila melanogaster CG33256-PA
            protein.
          Length = 1431

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 366  LAGASTEQTEEIAVNDYDATVPEDLPDDEVPLNEELQIILPPRCDDVTAESSVTKTG*RK 187
            L G S        V +    VPE+LP +E  L E+ + + P   +D+ AE    K   +K
Sbjct: 1163 LGGESITLFSRSPVREILPDVPEELPQEEEALEEQPEAVAP--LEDLPAEKPKKKKSKKK 1220

Query: 186  MNSKS 172
            +   S
Sbjct: 1221 LRKGS 1225


>AY069232-1|AAL39377.1|  523|Drosophila melanogaster GH27892p
           protein.
          Length = 523

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 415 RYIFSAGFRLGNWMQEIRHALIVIHIFLFNRFSYTLCERKDYL*RFFVLLETSRWQICIA 594
           R IF       NW +     L  + +FL+     TL + K  L RF++L  + +  +C+A
Sbjct: 430 RSIFPFDMATLNWEEYFTRILSGMRVFLYKESWDTLEQAKKRLFRFYILHRSLQLVLCLA 489


>AE014134-1536|AAF52692.2|  523|Drosophila melanogaster CG13091-PA
           protein.
          Length = 523

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 415 RYIFSAGFRLGNWMQEIRHALIVIHIFLFNRFSYTLCERKDYL*RFFVLLETSRWQICIA 594
           R IF       NW +     L  + +FL+     TL + K  L RF++L  + +  +C+A
Sbjct: 430 RSIFPFDMATLNWEEYFTRILSGMRVFLYKESWDTLEQAKKRLFRFYILHRSLQLVLCLA 489


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,556,487
Number of Sequences: 53049
Number of extensions: 775625
Number of successful extensions: 2129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2129
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)