Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b18
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.8  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 SSINLCCIAIDLLFILRQPV 202
           S +NLC IA+D  + +  P+
Sbjct: 123 SILNLCAIALDRYWAITDPI 142


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 SSINLCCIAIDLLFILRQPV 202
           S +NLC IA+D  + +  P+
Sbjct: 123 SILNLCAIALDRYWAITDPI 142


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 SSINLCCIAIDLLFILRQPV 202
           S +NLC IA+D  + +  P+
Sbjct: 123 SILNLCAIALDRYWAITDPI 142


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 357 ASTEQTEEIAVNDYDATVPEDLPDDEVPLNE 265
           A  +  EE A    +  +P +LP+DE  L E
Sbjct: 137 AREDNDEEEAQKPKEQYIPPELPNDEKSLFE 167


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 271 QWNLVVRKIF-WYSRIVIIDGYFLGLFCASPG 363
           +W  ++RK    +  IV    Y +GLFC + G
Sbjct: 406 EWPRLLRKRKELFIAIVCFVSYLIGLFCITEG 437


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 271 QWNLVVRKIF-WYSRIVIIDGYFLGLFCASPG 363
           +W  ++RK    +  IV    Y +GLFC + G
Sbjct: 459 EWPRLLRKRKELFIAIVCFVSYLIGLFCITEG 490


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 705 PGIVKHRNSFRSLHRPDLK--RVPYLRRMKPDE 613
           P +  +  S   LHRPD K   VP L  + PD+
Sbjct: 122 PNLFIYALSVAILHRPDTKDLPVPPLTEVFPDK 154


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 SSINLCCIAIDLLFILRQPVL 205
           S ++LC I+ID    + QP++
Sbjct: 125 SILSLCAISIDRYLAVTQPLI 145


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 SSINLCCIAIDLLFILRQPV 202
           S +NLC I++D    + +PV
Sbjct: 152 SILNLCAISLDRYLAVTRPV 171


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 627 CDVDKVLVLDQVGEE 671
           CDVD     DQ+G+E
Sbjct: 132 CDVDVSTFFDQLGQE 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,514
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)