Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b15
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    46   5e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    28   0.78 
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.6  

>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 30/89 (33%), Positives = 39/89 (43%)
 Frame = -3

Query: 381 KMTVNNTIAHQRLILSGDXXXXXXXXXXXXXECGWRDQVRMLCRDIVKENESGNITFDSL 202
           KMT    +  ++L  +GD              CGW  Q+R   R IV  N    I F  L
Sbjct: 9   KMTTEKIV--EQLYETGDYERLANELEYKLESCGWTTQLRDYTRGIV--NSDSKIDFQKL 64

Query: 201 VTKVTPRARALVPDSVKKELLQKIKTHLL 115
                  A   +PDSVK +LL+ IKT +L
Sbjct: 65  YESALQSATESIPDSVKMDLLKDIKTCVL 93


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 270 QVRMLCRDIVKENESGNITFDS 205
           Q R L +DI   NE GN+ FDS
Sbjct: 92  QERCLLKDICHVNEDGNVAFDS 113


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 185 PVLEHLCQIQ*KKNYCRKLKPIYSHRKTNKDKILIKFVLC 66
           PVLEH  ++  +   C  ++ I  +    KDK LI  VLC
Sbjct: 54  PVLEH--RVTWEYETCVSVRMIIDNDNLLKDKFLILQVLC 91


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 267 VRMLCRDIVKENESGNITFDSLVTKVTP 184
           ++ L R +V ENE+GNI     V+ + P
Sbjct: 125 LKRLQRFLVSENEAGNINRQEAVSMLPP 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,614
Number of Sequences: 5004
Number of extensions: 39481
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)