Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11b14
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 119 6e-28
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.62
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 3.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 4.4
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 4.4
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 26 5.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 5.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 7.7
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 7.7
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 26 7.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 7.7
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 119 bits (286), Expect = 6e-28
Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Frame = -2
Query: 682 SNPKSYSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLR 503
SNP+ GIP A+F EF + ++ E L+ E KYK ME ++ + L
Sbjct: 4 SNPR---GIPPAQFF----EFKE--LSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLD 54
Query: 502 QQIPDLARTIEVIEKLKE-QKEEVETQFLLSDQVFVKANVPPTKSVCLWLGANVMLEYSL 326
+IPD+ +T++ ++ LKE Q + + L+D + KA V +V LWLGANVMLEY++
Sbjct: 55 DKIPDIRKTLQSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTV 114
Query: 325 EDAEKLLTTNMETAQENLNQVEHDLDFLRDQCTTTEVNMARVYNWDVKKRQ 173
E+AE LLT + +A+E L + DL+FLR Q TT EVN ARVYN+ V R+
Sbjct: 115 EEAEALLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.5 bits (63), Expect = 0.62
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -2
Query: 565 EKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQFLLSDQVFVKA 392
E++RKY + LA + + + P +A TI ++ LKE + EV ++D V A
Sbjct: 250 EEYRKYIEKDAALARRFQAVMVNEPSVADTISILRGLKE-RYEVHHGVRITDDALVTA 306
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 643 FVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDL-ARTIEV 467
+VD E + P + + + S+D + R+ E T+ T ++ ++IPD+ AR +
Sbjct: 133 WVDLDREDLAYPEIQQALQSISHSIDLQERERIEWENTIQTSSQQKYEEIPDIQARRLYF 192
Query: 466 IEKLKE 449
IE KE
Sbjct: 193 IEADKE 198
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 580 LKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEE 437
L+SL++K + Y++ ATK + L ++ + I+ + K E KEE
Sbjct: 1095 LESLNDKDQLYQLQ----ATKNKELEAKVKECLNNIKSLTKELENKEE 1138
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 535 YTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQ 425
+ L TK +P ++ + + E + EQKEE+E+Q
Sbjct: 1215 WNLLTKPSPRSASLPKNSQPLSISEIMTEQKEEIESQ 1251
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 158 HYHLLSLTTTECVDC 114
+Y LL L TTECV+C
Sbjct: 759 NYGLLDLITTECVEC 773
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 306 SNFSASSRLYSNITLA----PSHKHTDFVGGTLA 395
SNFS ++ S+ T + P+H+HT F G TL+
Sbjct: 272 SNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLS 305
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 688 EPSNPKSYSGIPEAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVME 536
E PK Y G PE + E +K I + V + L K RK K++E
Sbjct: 58 EAYTPKKYKGFPEISSREEAIEVLKLLI-MNSMLVRVDKLPPKQRKQKLVE 107
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.8
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 420 RNCVSTSSFCSFNFSITSIVRAKSGICCRNRLLLVANVYSITLYLRCFSSRLFKTTSTPS 599
+N S SS +N + S + R L V N+ L+ S++ F+T
Sbjct: 55 KNDSSNSSTYRWNIDLLSSTATIDDSVAKRRKLAVQNL------LQYDSTQTFQTGDEID 108
Query: 600 ALIGDFINSSTLSTNSASGIPEYDLGFE 683
LIG + S+ L+ ++ I + DL +E
Sbjct: 109 ELIGKSVGSNVLNVLRSNPIYDDDLRYE 136
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 519 LVANVYSITLYLRCFS-SRLFKTTSTPSALIGDFINSSTLSTNSASG 656
LV + +I L L+ + S K++STPS D + + TL++ ASG
Sbjct: 183 LVRALQTIELLLKKYEVSNTTKSSSTPSPSTDDNVPTGTLNSLIASG 229
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 312 FSASSRLYSNITLAPSHKHTDFVGGTL 392
FSASSR S + S K TDFV TL
Sbjct: 127 FSASSRASSTKSTLSSVKETDFVTETL 153
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 7.7
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = -2
Query: 652 EAEFVDNVDEFMKSPINAEGVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPD----- 488
EA F + DE P E + ++ L+EK K T+ T + ++Q+I
Sbjct: 590 EAPF-EEPDEPAHEPTEEEQEE--MRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTRL 646
Query: 487 --LARTIEVIEKLKEQKEEVETQFLLSDQ 407
L ++ ++ +KE+ ++ +Q L++DQ
Sbjct: 647 MILREELQELDAIKEEAQKQISQSLIADQ 675
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -2
Query: 595 GVDVVLKSLDEKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVETQFLL 416
G +L ++E +KY V TLAT + P + I +E+LK+ VE +
Sbjct: 275 GYKAILSRVEELAKKYNVSMATLATAWSLHKGDYPIVG--ISKVERLKDALAAVELKLSE 332
Query: 415 SD 410
D
Sbjct: 333 ED 334
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 7.7
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 700 GDGVEPSNPKSYSGIPEAEFVDNVD----EFMKSPI-NAEGVDVVLKSLDEKHRKYKVME 536
GD + + S + E EFV+ + + KS I +E DV LK++ +K+
Sbjct: 22 GDSTDTESSFSDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKN------- 74
Query: 535 YTLATKRRRLRQQIPDLARTIEVIEKLKEQKEEVE 431
KR R + IP + E IEK + EVE
Sbjct: 75 -----KRERNDKLIPQQSNESEAIEKPVQSTTEVE 104
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 658 IPEAEFVDNVDEFMKSPINAEGVDVVLKSLDE 563
IP + + +VD+ +SP+ VDV K +DE
Sbjct: 320 IPSEQQIISVDKATESPVQEVAVDVNEKPVDE 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,700
Number of Sequences: 5004
Number of extensions: 60896
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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