Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b13
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0148 + 16818631-16819173,16819264-16819464                       27   5.1  
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109...    26   6.7  
03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70...    26   8.9  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    26   8.9  

>01_04_0148 + 16818631-16819173,16819264-16819464
          Length = 247

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 11  GRSVSSGTGGLSYI*HGILQHISTQTRIEKFPKSLLKHDTSKTR*RYF 154
           G ++  GTG + +  +G  +    Q R E+   + L+ +T+  R RY+
Sbjct: 149 GANIDVGTGSIRFHINGKEEKFEFQPRTEQCSMNFLEKETTMPRNRYW 196


>08_02_0132 +
           12908995-12909437,12909727-12910211,12910417-12910988,
           12911080-12911211,12912184-12912939
          Length = 795

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 11  GRSVSSGTGGLSYI*HGILQHISTQTRIEKFPKSLLKHDTSKTR*RYF 154
           G ++  GTG + +  +G  +    Q R E+   + L+ +T+  R RY+
Sbjct: 468 GANIDMGTGSIYFHINGKEKKFEFQPRTEQCSMNFLEKETTMPRNRYW 515


>03_01_0086 -
           699617-699766,699851-699908,699998-700068,700210-700286,
           700384-700466,700545-700604,700848-700983,701056-701126,
           701248-701339,701454-701551,701891-702043,702146-702311,
           702457-702885,703076-703157,703245-703504
          Length = 661

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 IFRFNPLDFKLWSVLEDMACS 267
           +FRF  +D K WS LE+ A S
Sbjct: 85  VFRFLEIDPKAWSGLEETAAS 105


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -3

Query: 308 PKIF*RDSMSPCRL--EQAM--SSKTDHNLKSKGL 216
           PK+  R++ SPC L  +Q +  +S  DHNLKSK L
Sbjct: 568 PKVVLRET-SPCALPIDQRVPHASSKDHNLKSKVL 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,371,504
Number of Sequences: 37544
Number of extensions: 131871
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)