Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b13
         (343 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089414-1|AAL90152.1|  195|Drosophila melanogaster AT23593p pro...    27   6.4  
AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-P...    27   8.4  

>AY089414-1|AAL90152.1|  195|Drosophila melanogaster AT23593p
           protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 213 SEYEELINSG*CNFLNNFKQKY 148
           +EYE   +SG  NFL +FK++Y
Sbjct: 43  TEYEYASSSGFVNFLRDFKKRY 64


>AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-PA
           protein.
          Length = 1324

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 291 SLKNLWRKQWRNF-PWK 338
           S K +W +QWRN  PWK
Sbjct: 284 SQKFIWSEQWRNLSPWK 300


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,506
Number of Sequences: 53049
Number of extensions: 223459
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)