Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b13
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    41   3e-04
Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical pr...    27   2.7  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 217 NPLDFKLWSVLEDMACSKRHGDIESL 294
           NP+D+ +WSVLE  ACSK H +I+SL
Sbjct: 345 NPMDYSVWSVLEAKACSKPHRNIDSL 370


>Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical
           protein B0564.4 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 107 WEIFLFVFEWKCVVKYRAIYRRALLYL 27
           W+ F+ +F WK  + ++AIY   +++L
Sbjct: 15  WKFFVLLFRWKGSI-WKAIYMETIIFL 40


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 319 HCFLQRFFKEIQCRRVV*SRPCPLKLT 239
           H   +   +E+QCR     RPCP+KLT
Sbjct: 741 HQCSEHLMQELQCRL----RPCPVKLT 763


>U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical
          protein T24C12.4 protein.
          Length = 218

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 83 EWKCVVKYRAIYRR 42
          +W C++K RA++RR
Sbjct: 9  DWHCIIKVRAMFRR 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,300,394
Number of Sequences: 27780
Number of extensions: 121956
Number of successful extensions: 226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)