Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b12
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    23   6.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    23   8.0  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    23   8.0  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 189 HDKLKKKPVKYVCQCH 142
           H+ L KKP    C+CH
Sbjct: 225 HEYLVKKPSNCDCECH 240


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 237 VTSTFSHAFYSDHAT*HDKLKKKPVKYVCQCHKXRHFL 124
           +T+TF ++ +S     H K       YV +  K  HFL
Sbjct: 426 LTATFGYSLFSSSFLSHTKNPDVASFYVKERSKAHHFL 463


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 173 KNLSNMCVSVTXVDIS*TRETNYILTFSFSIPMKE 69
           KNLS   +S+T VD++    T+  L+ S S+ ++E
Sbjct: 410 KNLSQPILSITSVDVN-LVITDKNLSTSLSVQLRE 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,054
Number of Sequences: 5004
Number of extensions: 14501
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)