Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11b11
(474 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa cent... 28 7.4
AY069802-1|AAL39947.1| 1109|Drosophila melanogaster SD04227p pro... 28 7.4
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 28 7.4
AE014296-2466|AAZ83990.1| 1109|Drosophila melanogaster CG33957-P... 28 7.4
AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-P... 28 7.4
AY084209-1|AAL89947.1| 866|Drosophila melanogaster SD08058p pro... 27 9.8
AY069678-1|AAL39823.1| 330|Drosophila melanogaster LD45246p pro... 27 9.8
AE014297-2156|AAF55279.2| 330|Drosophila melanogaster CG5916-PA... 27 9.8
AE014297-2098|AAF55241.1| 866|Drosophila melanogaster CG4225-PA... 27 9.8
>AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa
centrosomal protein protein.
Length = 2726
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = -3
Query: 349 ENFEKETKSRVAWFIRNHEEISK--RLKFSANYKGYHLEDVI---RKPIEML-LRTLSRQ 188
+ +EKE + RVA+ R +E+ K R K SA + H + + IE L R ++ Q
Sbjct: 2328 QRYEKELQERVAYCERLKQEMEKLSRDKESAETELEHFNERLTLQASEIESLEARLVTLQ 2387
Query: 187 HLENNVNRRKVAPQQDPIKFTYKVHRPKN 101
E + Q+ +K ++H K+
Sbjct: 2388 EAETRRANTRTRQHQENVKLQAEIHELKS 2416
>AY069802-1|AAL39947.1| 1109|Drosophila melanogaster SD04227p
protein.
Length = 1109
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = -3
Query: 349 ENFEKETKSRVAWFIRNHEEISK--RLKFSANYKGYHLEDVI---RKPIEML-LRTLSRQ 188
+ +EKE + RVA+ R +E+ K R K SA + H + + IE L R ++ Q
Sbjct: 711 QRYEKELQERVAYCERLKQEMEKLSRDKESAETELEHFNERLTLQASEIESLEARLVTLQ 770
Query: 187 HLENNVNRRKVAPQQDPIKFTYKVHRPKN 101
E + Q+ +K ++H K+
Sbjct: 771 EAETRRANTRTRQHQENVKLQAEIHELKS 799
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 367 IIKFLSENFEKETKSRVAWFIRNHEEIS-KRLKFSANY 257
++ L + EK R+ WFI+ H IS ++ F +N+
Sbjct: 518 LLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNH 555
>AE014296-2466|AAZ83990.1| 1109|Drosophila melanogaster CG33957-PC,
isoform C protein.
Length = 1109
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = -3
Query: 349 ENFEKETKSRVAWFIRNHEEISK--RLKFSANYKGYHLEDVI---RKPIEML-LRTLSRQ 188
+ +EKE + RVA+ R +E+ K R K SA + H + + IE L R ++ Q
Sbjct: 711 QRYEKELQERVAYCERLKQEMEKLSRDKESAETELEHFNERLTLQASEIESLEARLVTLQ 770
Query: 187 HLENNVNRRKVAPQQDPIKFTYKVHRPKN 101
E + Q+ +K ++H K+
Sbjct: 771 EAETRRANTRTRQHQENVKLQAEIHELKS 799
>AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-PB,
isoform B protein.
Length = 2897
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = -3
Query: 349 ENFEKETKSRVAWFIRNHEEISK--RLKFSANYKGYHLEDVI---RKPIEML-LRTLSRQ 188
+ +EKE + RVA+ R +E+ K R K SA + H + + IE L R ++ Q
Sbjct: 2499 QRYEKELQERVAYCERLKQEMEKLSRDKESAETELEHFNERLTLQASEIESLEARLVTLQ 2558
Query: 187 HLENNVNRRKVAPQQDPIKFTYKVHRPKN 101
E + Q+ +K ++H K+
Sbjct: 2559 EAETRRANTRTRQHQENVKLQAEIHELKS 2587
>AY084209-1|AAL89947.1| 866|Drosophila melanogaster SD08058p
protein.
Length = 866
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 11 FLYFSFNWFHNFIVF*TVNSFCYKPAELCIIFWPMNFVRK 130
+ ++FNW+ IVF T+ F Y + + I W + R+
Sbjct: 389 YFVYAFNWWFGLIVFLTM--FLYIASTIAITEWRTKYQRR 426
>AY069678-1|AAL39823.1| 330|Drosophila melanogaster LD45246p
protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 153 ATFRRLTLFSKCCLERVLSNISIGFRITSSKWYPL*FAENL 275
A FR L + + R + N+ + + + +SKW+ FAE L
Sbjct: 200 AVFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVL 240
>AE014297-2156|AAF55279.2| 330|Drosophila melanogaster CG5916-PA
protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 153 ATFRRLTLFSKCCLERVLSNISIGFRITSSKWYPL*FAENL 275
A FR L + + R + N+ + + + +SKW+ FAE L
Sbjct: 200 AVFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVL 240
>AE014297-2098|AAF55241.1| 866|Drosophila melanogaster CG4225-PA
protein.
Length = 866
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 11 FLYFSFNWFHNFIVF*TVNSFCYKPAELCIIFWPMNFVRK 130
+ ++FNW+ IVF T+ F Y + + I W + R+
Sbjct: 389 YFVYAFNWWFGLIVFLTM--FLYIASTIAITEWRTKYQRR 426
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,773
Number of Sequences: 53049
Number of extensions: 316636
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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