Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11b11
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical pr... 36 0.011
AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical ... 29 1.3
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 29 2.3
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 29 2.3
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p... 27 5.2
Z19152-6|CAA79542.2| 774|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z19152-5|CAA79541.1| 698|Caenorhabditis elegans Hypothetical pr... 27 5.2
U00042-2|AAA50673.1| 165|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF241656-1|AAG36873.1| 698|Caenorhabditis elegans SR protein sp... 27 5.2
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 27 6.9
U13876-5|AAA21176.2| 449|Caenorhabditis elegans Mammalian bysti... 27 6.9
>Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical
protein C29F7.6 protein.
Length = 732
Score = 36.3 bits (80), Expect = 0.011
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = -3
Query: 364 IKFLSENFEKETKSRVAWFIRNHEEIS---KRLKFSANYKGYHLEDVIRKPIEMLLRTLS 194
I L EN KETK ++ FI++ +E+ + S+N Y L +R+ ++ L+ +
Sbjct: 111 IHLLPENTNKETKLKILEFIKSEDEVDCSMNLVPLSSNRPDYMLTSGVRQILKNLVSAVE 170
Query: 193 RQHLENNVNRR-KVAPQQDPI--KFTYKVHRPKND 98
+N R+ K+ PI K K+ + KN+
Sbjct: 171 NSKSKNTRGRKSKIQSNLTPINEKSECKIIKRKNE 205
>AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical
protein C04E12.4 protein.
Length = 609
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -3
Query: 187 HLENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQK 11
HLEN+ R V Q DPI Y H KN ++ F+ + + ++ E KP +A + K
Sbjct: 77 HLENDSQNRYVEFQYDPISGKYS-HVNKNGSRINPFVVKNVE--RHSE--KPYDAYLHK 130
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -3
Query: 346 NFEKETKSRVAWFI---RNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLEN 176
NFE+ + + FI ++ EI + NY G+H DV+ +P+ L+ + R +
Sbjct: 86 NFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHSEDRDDIRQ 145
Query: 175 NVNRRKVAPQQDPIKFTYKVHRPKN 101
++ P + V P+N
Sbjct: 146 QLDSNFHIPTSSASN-QFDVFAPQN 169
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -3
Query: 346 NFEKETKSRVAWFI---RNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLEN 176
NFE+ + + FI ++ EI + NY G+H DV+ +P+ L+ + R +
Sbjct: 128 NFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHSEDRDDIRQ 187
Query: 175 NVNRRKVAPQQDPIKFTYKVHRPKN 101
++ P + V P+N
Sbjct: 188 QLDSNFHIPTSSASN-QFDVFAPQN 211
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 229 RKPIEMLLRTLSRQHLENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKN 50
+K I+ L L+ + +N+ Q F K+H+ +DT+ ITE +N L +
Sbjct: 638 KKSIDSKLEELANVYTDNDPRCLLEGIQNSVENFEVKIHQKVDDTKKLLHITENMNELNS 697
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -3
Query: 346 NFEKETKSRVAWFI---RNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLEN 176
NFE+ + + FI ++ EI + NY G+H DV+ +P+ L+ + R +
Sbjct: 128 NFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHSEDRDDIRQ 187
Query: 175 NVNRRKVAPQQDPIKFTYKVHRPKN 101
++ P + V P+N
Sbjct: 188 QLDSNFHIPTSSASN-QFDVFAPQN 211
>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
protein B0464.5a protein.
Length = 1003
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 280 RLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQ 146
+L +NY+G HLE V RK +L L H + + + P+
Sbjct: 516 KLIIRSNYRGLHLEQV-RKICRQVLEALGYMHEKCGIIHTDIKPE 559
>Z19152-6|CAA79542.2| 774|Caenorhabditis elegans Hypothetical
protein B0464.5c protein.
Length = 774
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 280 RLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQ 146
+L +NY+G HLE V RK +L L H + + + P+
Sbjct: 228 KLIIRSNYRGLHLEQV-RKICRQVLEALGYMHEKCGIIHTDIKPE 271
>Z19152-5|CAA79541.1| 698|Caenorhabditis elegans Hypothetical
protein B0464.5b protein.
Length = 698
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 280 RLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQ 146
+L +NY+G HLE V RK +L L H + + + P+
Sbjct: 228 KLIIRSNYRGLHLEQV-RKICRQVLEALGYMHEKCGIIHTDIKPE 271
>U00042-2|AAA50673.1| 165|Caenorhabditis elegans Hypothetical
protein T04A6.2 protein.
Length = 165
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 89 ELCIIFWPMNFVRKFYRILLRGHF 160
+L +FWP+NF R+ YRI+ + F
Sbjct: 12 KLLNMFWPINFNREEYRIVTQKPF 35
>AF241656-1|AAG36873.1| 698|Caenorhabditis elegans SR protein
specfic kinase SPK-1 protein.
Length = 698
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 280 RLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQ 146
+L +NY+G HLE V RK +L L H + + + P+
Sbjct: 228 KLIIRSNYRGLHLEQV-RKICRQVLEALGYMHEKCGIIHTDIKPE 271
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 202 TLSRQHLENNVNRRKVAPQQDPIKFTY 122
T S Q++ N+ RR+ + QQ I FTY
Sbjct: 571 TASLQYVSQNLGRRRQSRQQATIVFTY 597
>U13876-5|AAA21176.2| 449|Caenorhabditis elegans Mammalian bystin
(adhesion protein)related protein 1 protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 184 LENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAE 20
L+N + KVA Q+D ++ K R + D+Q F+ ++++S +E K + E
Sbjct: 19 LDNQLEAGKVAKQRDELR--EKQKRKREDSQTDEFVPDSLSSKILNEARKQLLEE 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,457
Number of Sequences: 27780
Number of extensions: 186867
Number of successful extensions: 491
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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