Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b09
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.60 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   7.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.8  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    25   9.8  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 342 NSQRSQCDTTSKTNTHQLYRQDKLRW 419
           NSQR++  TT+ TN  +LY QD   W
Sbjct: 20  NSQRTEFVTTTATNQVELYEQDGNGW 45


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 713 STAKIATEKTALRWYNASFLTLISLC-TPLGW 805
           S +K+  E    RWY+ S+   +++C   +GW
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIGW 829


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 653 ARTHSAEPSSIHWARTSPTASTAKIATEKTALRWYNASFLTLI 781
           A  H A  +S  W R      T+ ++  +   RW++ +F  ++
Sbjct: 610 ATVHLATCASHDWKRVDRLMMTSYVSLNQAQRRWFSKAFAKVV 652


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 368 CIALRSLRILYLYWNVRSGVSNLELHRYHWIKDV 267
           C      R +Y+ W++R+G++   L   +W K++
Sbjct: 219 CEQASRFRRVYIPWSIRNGLNAKTLINVYWEKEL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,631
Number of Sequences: 5004
Number of extensions: 65871
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)