Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11b07
(793 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 25 1.1
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 25 1.1
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 25 1.1
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 25 1.1
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 25 1.1
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 25 1.1
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 25 1.1
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 25 1.1
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 25 1.1
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 3.3
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 3.3
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 3.3
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 4.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 5.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 5.7
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 5.7
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 5.7
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 9.9
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 86 SNNYNYNNYNNNYKPLY 102
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 86 SNNYNYNNYNNNYKPLY 102
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 86 SNNYNYNNYNNNYKPLY 102
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 86 SNNYNYNNYNNNYKPLY 102
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY +Y
Sbjct: 308 SNNYNYNNYNNNYKPLY 324
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 718 HRLCLTLRSNIFLGGNRNYKSIICN 644
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 718 HRLCLTLRSNIFLGGNRNYKSIICN 644
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 718 HRLCLTLRSNIFLGGNRNYKSIICN 644
H++ +L SN + N NYK + CN
Sbjct: 79 HKIISSL-SNNYNYNNNNYKKLYCN 102
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 232 SNCLNYINYNFNYLTIY 182
SN NY NYN NY ++
Sbjct: 319 SNNYNYNNYNNNYKPLH 335
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 232 SNCLNYINYNFNY 194
SN NY NYN NY
Sbjct: 306 SNNYNYKNYNNNY 318
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 232 SNCLNYINYNFNY 194
SN NY NYN NY
Sbjct: 317 SNNYNYKNYNNNY 329
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 289 MIFFICLCNSSINP 248
++F++ CNS+INP
Sbjct: 46 VLFWLGYCNSAINP 59
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 289 MIFFICLCNSSINP 248
++F++ CNS+INP
Sbjct: 494 VLFWLGYCNSAINP 507
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 452 LSKFLFNPKGLLDPVW 499
L + F+ +GLL PVW
Sbjct: 213 LEELGFDTEGLLPPVW 228
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,309
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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