Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b05
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     26   0.39 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  ITNVYEEKIEQLKLHYENTMNEMQE 9
           ITN     I QLK H  +TMN++ E
Sbjct: 163 ITNFKNSNIFQLKQHMRDTMNKIAE 187


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
 Frame = -1

Query: 689 QSENSSEVEYAVINPYEPNSLANEDDLDNLQNHKLNLKTSKT--FETTTRPSRSINDFNR 516
           +S +SS      +   +P+   N++   N  NH  N  T K    E  +  S+ +ND   
Sbjct: 36  RSPSSSRSPSPSLLTSQPHQDHNKEKSKN--NHHCNQDTEKLNQLEIESDNSKEVNDKKE 93

Query: 515 KILHCN--------CPAQSEDNRCSSAEYQFRTASLIRKLRDIKAQNSLLHNELESLRHD 360
           +    +        C  + + N C   E Q R     + L D+K    +L N+    R D
Sbjct: 94  ENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRK---KSLDDVK----ILRND----RID 142

Query: 359 TLRSQNNCEECSINKTN 309
           + +S   C++CS  ++N
Sbjct: 143 SYKSNLKCDKCSTYQSN 159


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 536 SINDFNRKILHCNCPAQSEDNRCS 465
           S++D+N K +  +C    E+N CS
Sbjct: 150 SLSDYNDKPIPASCCNSPENNTCS 173


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 740 TQSPSANINLPPLVDSLQSENSSEVEYAVINP 645
           T SP +   +  L   +  + +S +EY + NP
Sbjct: 400 TTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNP 431


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 484  QKIIGVPLRNINSGLLV*LENFV 416
            QKI+   L + NSG L+ +EN +
Sbjct: 1111 QKILAKVLTSSNSGQLISVENLL 1133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,653
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)