Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b03
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    30   2.0  
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072...    30   2.6  
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569     29   3.5  
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413...    28   8.1  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   8.1  

>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/86 (23%), Positives = 36/86 (41%)
 Frame = -1

Query: 531 SPSAERSFTNCRGRGRPKKTWMESVNDDMREREKAHTKAPRVMRRRTSEVQDNQFYTQAP 352
           +PSA+ S    + +    K  +  V+DD +      ++ PR     TS V+D++    +P
Sbjct: 354 TPSAKVSPIFAKKKSATPKNGLSQVDDDAKSVFSVQSERPRRHSIATSTVRDDESLASSP 413

Query: 351 VVNRFYLI*SSNSTSAKTNGSVSVNG 274
            V  +     S     +  GS   +G
Sbjct: 414 SVPSYMAPTKSARAKLRLQGSAVTDG 439


>10_08_1027 -
           22404169-22404807,22406148-22406360,22407062-22407255,
           22407422-22407566,22407801-22407875,22408222-22408380,
           22408466-22408645,22408756-22409243,22409375-22409738,
           22409811-22409943,22410023-22410153,22410247-22410354,
           22410451-22410897,22411425-22411514,22411607-22411915,
           22412209-22412320,22412488-22412699
          Length = 1332

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 334 IKSINNWRLCIKLIILNF*SSPSHHSRGLRVSFLSLSHIVIHRLHPCLLRSTS 492
           + S+N     +K +      SPS  S   R   +     +I +LHPCL RS S
Sbjct: 103 LTSVNQMVALLKKLTFGAMLSPSEASEEFRQGIIRCFRAMILQLHPCLDRSCS 155


>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
          Length = 411

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 444 REREKAHTKAPRVMRRRTSEVQDNQFYTQAPVVNRF 337
           RE  +A T  PR+  R   E Q +QFYT +   ++F
Sbjct: 122 REGYRAETTEPRMYSRSLIEKQASQFYTTSMFADKF 157


>10_08_0486 -
           18239351-18239592,18240893-18240984,18241279-18241364,
           18241442-18241643,18241743-18241960,18242524-18242640
          Length = 318

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -1

Query: 765 HHRQIFCASYHGLSKF**YYYRWAALNHHTD---FGGEAVMR--SGFKGGAAYYKNET*K 601
           HH ++    Y  L+     YY W+A    T    +GGE V++    +  G   Y N+   
Sbjct: 50  HHAEMDSVEYFNLADLWEQYYEWSAYGAGTTVQLYGGERVVQYYVPYLSGIQLYTNKAQT 109

Query: 600 SSLKSGYD 577
           +S   G D
Sbjct: 110 ASRSFGED 117


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 118 WTSSQPI--WC*VVTGAHRHPQRKCATHL 198
           WT++ P   W  V  G HRHP R  A  L
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,440,652
Number of Sequences: 37544
Number of extensions: 456899
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)