Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11b03
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    32   0.58 
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    30   1.8  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 519  ERSFTNCRGRGRPKKTWMESVNDDMRER-EKAHTKAPRVMRR 397
            E   T  RGRGRP KT +E++ +   ER E A T   R  RR
Sbjct: 1740 EEPTTPKRGRGRPPKTVLENIEEGEEERKETAATPLLRSARR 1781


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 479 FGRPLPLQLVNDLSADGLLSGYRSSNGASTT*MS*PDLRLDFYVS 613
           FG+ +P+++VND  +D  L      NG S      P+ R+ + +S
Sbjct: 55  FGKHIPVEVVNDFKSDIRLPRRHKRNGVSRAAKLWPNARIPYAIS 99


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 223 LETLELISQGVWRIYVVDVYGLQ*PLNTRW---AVSSSTHLSKKKKVFM*NCSAY 68
           + +++LI   V RI+   VYG++ P+N  W   A+  ST ++ K  +F+  C  Y
Sbjct: 216 MASVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGST-IAVKLTLFI-ICQKY 268


>Z68342-6|CAD89740.1|  418|Caenorhabditis elegans Hypothetical
           protein F38E11.6b protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -2

Query: 401 DGELQKFKIINFIHKRQ--LLIDFI*SK 324
           D ELQKFK INF+ K++   L +FI +K
Sbjct: 337 DAELQKFKRINFMEKKKEVYLDEFIKNK 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,097,356
Number of Sequences: 27780
Number of extensions: 391734
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)