Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a24
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    31   0.20 
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.46 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.60 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    29   0.80 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.4  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   3.2  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   3.2  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   4.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   4.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.4  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   9.8  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   9.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   9.8  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   9.8  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.8  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -3

Query: 391 ELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLISP 212
           +L+V+D+  K    F     + +  +   FFY L    FN   +L  +    N GL ISP
Sbjct: 336 KLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISP 395

Query: 211 AKNLAFGKSGNSYFMFDCQSYGAPVF 134
             ++       SYF F  +  G  ++
Sbjct: 396 LSSV--NPDFRSYFRFVGRVMGLAIY 419


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -3

Query: 610 DLYSLWGTLHLMDTKFDEDHRGKQYLATCVIALV-MVQACN--ISAWTSNFLDGIVE 449
           D+  +W  L+L+D   DED    QYL  C+I +V ++   N  +S +T +FL  I E
Sbjct: 106 DIDCIWYQLNLLDIS-DEDILCLQYLQGCLIPIVSIIYDFNEFLSPFTKSFLSKIGE 161


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 748  PLVDEKMYWLNIEMLPWSRMNSLNDLGFERKT-PKTMWKDWDIEFPGDLYSLWGTLHLM 575
            P++D+ +Y L+          S+N  G  RK  P+  W++ ++ F   L   W T   M
Sbjct: 957  PVIDDSIYELSAAS---KYQQSINQKGHHRKEDPQKQWQEKELAFSSTLSEAWRTRRKM 1012


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 712 EMLPWSRMNSLNDLGFERKTPKTMWKDWDIEFPGDL 605
           E+  W + +   D    +K P+  ++ W  +FP DL
Sbjct: 750 EISSWKKASEYMDTNLGKKCPENAFQGWTWQFPNDL 785


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = -3

Query: 544 KQYLATCVIALVMVQACN-ISAWTSNFLDGIVEIGDKYH------KSCLNKIGNKPNYEL 386
           KQ+LA     L +    N +    S FL  I + G+ Y       + C+ K  N P Y+L
Sbjct: 14  KQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKFLNSPLYQL 73

Query: 385 NVNDLDSKFEDMFPY---SFSVKFENIIF 308
           + N + S F D F +     ++KF  I+F
Sbjct: 74  DENAVLSIFYDCFFFLKEQQTLKFIIIVF 102


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 594 HNEYKSPGNSMSQSFHMVLGVFRSNPKSLREFILDH 701
           +NEY+ P      SF  +L  F      +REF+  H
Sbjct: 217 NNEYRKPNWKGMASFGTILQEFNGGASVVREFVNQH 252


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 331 RKMNMETYPRIYYPNRLRSIHNWVYFRFYLN--NFCD 435
           R+MN   YP +YYP  +  +H   Y  FY N  N CD
Sbjct: 499 RRMNSHRYPFLYYP-EVYILHGG-YKSFYENHKNRCD 533


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 475 SNFLDGIVEIGDKYHKSCLNKIGNKPNY 392
           SNFLD  V+    +H +C++K+    NY
Sbjct: 23  SNFLDYAVDKYPDFHFTCIDKLSYVSNY 50


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 271 LSKALVYFFEKSNQGLLISPAKNLAFGKSGNSYFMFDCQSYG 146
           +S A++YF        ++S   N    K    Y  FDCQ+ G
Sbjct: 45  ISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFDCQNDG 86


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +3

Query: 663 SNPKSLREFILDHGSISIFNQYIFSSTNGRFF------LRLRYGK 779
           S+P   R  ++D GS   +N+ +++    RF+      L L YGK
Sbjct: 653 SHPLKARIKLIDFGSSCFYNEKVYTYLQSRFYRAPEIILGLEYGK 697


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 409 GNKPNYELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKAL 257
           GN P++   V +    F D    S S + +++I        PDRF + + L
Sbjct: 366 GNSPSFADGVKEKQVDFRDPVWKSVSRQAKDLISNLLKTNPPDRFTVKQCL 416


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 585 FILWIRNSTKTIEENSTSRRVL*HSSWFK 499
           F+LW+ +  K +        VL H SWFK
Sbjct: 338 FVLWVYSLDKELWLQLDMLGVLNHGSWFK 366


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = -3

Query: 166 FDCQSYGAPVF-------CPGRGAAYILKCESLNRLI 77
           F C S G P +        P  G  Y+LKCES  RL+
Sbjct: 213 FICSSTGGPEYEKAKAANIPILGLDYLLKCESEGRLV 249


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 22/71 (30%), Positives = 39/71 (54%)
 Frame = -3

Query: 610 DLYSLWGTLHLMDTKFDEDHRGKQYLATCVIALVMVQACNISAWTSNFLDGIVEIGDKYH 431
           +L +++ +  L++  +  D   K Y+AT   + V VQ+  I    S+F+D I++IG  Y 
Sbjct: 185 NLLNIFCSNSLVEKAYLFDVLSKIYVATDS-SPVDVQSYEIC---SDFIDVILDIGSIYG 240

Query: 430 KSCLNKIGNKP 398
           +S   K G+ P
Sbjct: 241 RSSQLKPGHSP 251


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 334 SVKFENIIFGFFYNLLPDRFNLS 266
           SV+  +I+FGF+ N++  RF+ S
Sbjct: 223 SVELLDIVFGFWNNIIEKRFSKS 245


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -3

Query: 319 NIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLIS------PAKNLAFGKSGNSYFMFDC 158
           NIIFG  +N  PD F L    +   ++ +  L+ +       ++NL F      +++   
Sbjct: 656 NIIFGEDWNNFPDGFELKVECITLQKRLDTNLIFTNWINDVSSRNLNFDFDSKIFYLTQS 715

Query: 157 QSYGAPV 137
           +S  +P+
Sbjct: 716 ESAESPL 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,666,464
Number of Sequences: 5004
Number of extensions: 84316
Number of successful extensions: 253
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)