Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a24
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0834 - 6306469-6306519,6306754-6306857,6307069-6307126,630...    30   2.6  
12_01_0740 + 6646471-6649407                                           28   7.8  
09_04_0586 - 18736643-18736914,18737085-18737187,18737279-187379...    28   7.8  

>06_01_0834 -
           6306469-6306519,6306754-6306857,6307069-6307126,
           6308533-6308560,6309028-6309080
          Length = 97

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 355 DMFPYSFSVKFENIIFGFFYNLLPDRFNLSK 263
           DM+     + F  I+ G  Y  + DRFNLSK
Sbjct: 58  DMWCSYLKLSFSEILIGVEYEFIEDRFNLSK 88


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 703 VAFQYSTNTFSRQPMADSSYV*DTVNL 783
           +   YSTN FS  P+  SSY+ +TV L
Sbjct: 568 ITLDYSTNRFSSMPLNFSSYLKNTVVL 594


>09_04_0586 -
           18736643-18736914,18737085-18737187,18737279-18737900,
           18738376-18738463,18738537-18738614,18738741-18738816,
           18738912-18738970,18739061-18739127,18739268-18739405
          Length = 500

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 181 NSYFMFDCQSYGAPVFCPGRGAAYILK 101
           N  F +    YG  VF PGR ++Y+ K
Sbjct: 194 NEPFTYSAYGYGKGVFAPGRCSSYVSK 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,460,445
Number of Sequences: 37544
Number of extensions: 453229
Number of successful extensions: 1109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)