Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a24
(822 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-3523|AAF51713.2| 1737|Drosophila melanogaster CG32436-P... 152 5e-37
BT012510-1|AAS93781.1| 284|Drosophila melanogaster AT05186p pro... 93 3e-19
AE014296-3722|AAN12204.1| 284|Drosophila melanogaster CG32462-P... 93 3e-19
AY084107-1|AAL89845.1| 276|Drosophila melanogaster AT08210p pro... 89 7e-18
AE014134-3304|AAF53935.2| 276|Drosophila melanogaster CG14402-P... 89 7e-18
BT023228-1|AAY55644.1| 514|Drosophila melanogaster IP02827p pro... 31 1.4
BT023216-1|AAY55632.1| 514|Drosophila melanogaster IP02927p pro... 31 1.4
AE014297-1238|AAF54586.1| 559|Drosophila melanogaster CG6633-PA... 31 1.4
>AE014296-3523|AAF51713.2| 1737|Drosophila melanogaster CG32436-PA
protein.
Length = 1737
Score = 152 bits (369), Expect = 5e-37
Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 6/250 (2%)
Frame = -3
Query: 739 DEKMYWLNIE-MLP-WSRMNSLNDLGFERKTPKTMWKDWDIEFPGDLYSLWGTLHLMDTK 566
+E + WL +E LP WSR+N N G R P + K +D+E G L+SLWG LH
Sbjct: 1470 NESLGWLELENCLPVWSRLNRRNTAGKYRNLPISKIKKFDVEIEGRLWSLWGNLHPEAPV 1529
Query: 565 FDEDHRGKQYLATCVIALVMVQACNISAWTSNFLDGIVEIGDKYHKSCLNKIGNKPNYEL 386
F+++ RG+QYL V+A + W+ + LD IV G Y K +++I +K +YE
Sbjct: 1530 FEDEVRGRQYLGCYVMACCAASVYRLMDWSPHLLDTIVVSGSTYFKESIDQI-SKEDYEF 1588
Query: 385 NVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLP-DRFNLSKALVYFFEKSNQGLLISPA 209
++ +L+ M +F V E++ +G Y + +R NLS+AL+YFF G++
Sbjct: 1589 SLENLNIDC-SMDTINFVVHIEHVCYGKLYRVPTFNRMNLSEALIYFFSHYQFGIVSVRK 1647
Query: 208 KNLAFG---KSGNSYFMFDCQSYGAPVFCPGRGAAYILKCESLNRLIYCITMTLNIRRHG 38
++LA G YFM+DCQ P+F +GA+Y+L+ L L+YC+ +TLN+ +
Sbjct: 1648 RSLAIGFCPSHDGGYFMYDCQEKDHPLFPKQQGASYMLRTRHLQVLLYCVVVTLNVPFYN 1707
Query: 37 QQFHLFSVSI 8
F + V +
Sbjct: 1708 IDFSIHKVEM 1717
Score = 44.8 bits (101), Expect = 1e-04
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Frame = -3
Query: 535 LATCVIALVMVQACNISAWTSNFLDGIVEIGDKYHKSCLNKIGNKPNYELNVNDLDSKFE 356
+ ++A V N WT + +DGI++ G K L K NY+ +VND D +
Sbjct: 317 IGAIIVAFVETFRLNPDFWTGSTMDGILKRGVK-----LTKKSADLNYKSDVNDFDI-IQ 370
Query: 355 DMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQGLLISPAKNLAFGKSG-N 179
+ +V+ + F LL + N+ KAL FF K N + S L K N
Sbjct: 371 QVAERDAAVEIKI----HFSGLLKNEPNMYKALSLFFSKYNACIFTSRDLFLLIWKRCLN 426
Query: 178 SYFMFDCQSYGAPVFCP---GRGAAYILKCESLNRLIYCITMTLNIRRHGQQFHLFSVSI 8
SY++FD G C G ++ L++ IT +++ +F++F +S+
Sbjct: 427 SYYIFD--PNGRDENCERNFEEGKCSLMATRYTEHLVHLITKFSDLQPQ-DEFNIFEISL 483
Query: 7 S 5
+
Sbjct: 484 T 484
>BT012510-1|AAS93781.1| 284|Drosophila melanogaster AT05186p
protein.
Length = 284
Score = 93.5 bits (222), Expect = 3e-19
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 4/215 (1%)
Frame = -3
Query: 637 KDWDIEFPGDLYSLWGTLHLMDTKFDEDHRGKQYLATCVIALVMVQAC-NISAWTSNFLD 461
+++D+E G L+SL G LH FD RG Q L CV+A + ++ W+ LD
Sbjct: 69 QNFDVELTGRLWSLSGGLHPRAPWFDRKVRGHQTLGCCVVACCVASTFRHLGEWSGKLLD 128
Query: 460 GIVEIGDKYHKSCLNKIGNKPNYELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPD 281
IV G++Y ++ + + + + V+D +P E
Sbjct: 129 AIVVNGNRYFRASVEQ-SERWDLHSGVDDARCNLS-WWPSGSPASRE------------- 173
Query: 280 RFNLSKALVYFFEKSNQGLLISPAKNLAFGKSGN---SYFMFDCQSYGAPVFCPGRGAAY 110
+ + L YFF + GLL + +FG S + YF+FDC ++ +F GA Y
Sbjct: 174 -MSSLEGLNYFFTRFQFGLLECQERRFSFGHSSSRDGGYFLFDCSAWAEALFPDDMGAFY 232
Query: 109 ILKCESLNRLIYCITMTLNIRRHGQQFHLFSVSIS 5
++ + L L+YC+ +TLN+RR +F L++V ++
Sbjct: 233 VMLAKHLQMLLYCVVVTLNVRRRNVEFRLYNVDVA 267
>AE014296-3722|AAN12204.1| 284|Drosophila melanogaster CG32462-PA
protein.
Length = 284
Score = 93.5 bits (222), Expect = 3e-19
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 4/215 (1%)
Frame = -3
Query: 637 KDWDIEFPGDLYSLWGTLHLMDTKFDEDHRGKQYLATCVIALVMVQAC-NISAWTSNFLD 461
+++D+E G L+SL G LH FD RG Q L CV+A + ++ W+ LD
Sbjct: 69 QNFDVELTGRLWSLSGGLHPRAPWFDRKVRGHQTLGCCVVACCVASTFRHLGEWSGKLLD 128
Query: 460 GIVEIGDKYHKSCLNKIGNKPNYELNVNDLDSKFEDMFPYSFSVKFENIIFGFFYNLLPD 281
IV G++Y ++ + + + + V+D +P E
Sbjct: 129 AIVVNGNRYFRASVEQ-SERWDLHSGVDDARCNLS-WWPSGSPASRE------------- 173
Query: 280 RFNLSKALVYFFEKSNQGLLISPAKNLAFGKSGN---SYFMFDCQSYGAPVFCPGRGAAY 110
+ + L YFF + GLL + +FG S + YF+FDC ++ +F GA Y
Sbjct: 174 -MSSLEGLNYFFTRFQFGLLECQERRFSFGHSSSRDGGYFLFDCSAWAEALFPDDMGAFY 232
Query: 109 ILKCESLNRLIYCITMTLNIRRHGQQFHLFSVSIS 5
++ + L L+YC+ +TLN+RR +F L++V ++
Sbjct: 233 VMLAKHLQMLLYCVVVTLNVRRRNVEFRLYNVDVA 267
>AY084107-1|AAL89845.1| 276|Drosophila melanogaster AT08210p
protein.
Length = 276
Score = 89.0 bits (211), Expect = 7e-18
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 17/247 (6%)
Frame = -3
Query: 703 PWSRMNSLNDLGFERKTPKTMWKDWDIEFPGDLYSLWGTLHLM---------DTKFDEDH 551
PWSR+ N G RK + +++E L+SLWG+ + ++ +
Sbjct: 28 PWSRLLEHNAEGCLRKRSGEKEEHYEVEISNHLWSLWGSTQQVKPGENSSSSESGSERTS 87
Query: 550 RGKQYLATCVIALVMVQACNISAWTSNFLDGIVEIGDKYH-KSCLNKIGNKPNYELNVND 374
Q LA CV+A ++ +W S+ LD I+ G Y+ +S + EL +
Sbjct: 88 PPGQALACCVLACCAGSFQSLDSWNSSALDKIMSNGRGYYDESLATRQHWDRTGELCLEC 147
Query: 373 LDSK-FEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQ-GLLISPAKNL 200
L++ F D + F V E + G Y+ +L AL FF + Q G+L + L
Sbjct: 148 LNTTCFLD--GHEFWVDIEKLCTGKLYSRTK---SLGSALSKFFGQHLQTGILQLRDQAL 202
Query: 199 AFG-----KSGNSYFMFDCQSYGAPVFCPGRGAAYILKCESLNRLIYCITMTLNIRRHGQ 35
AFG SG ++F+F CQ+ G P+F A Y+L+ L +L+YC+ +TL+ RRH
Sbjct: 203 AFGFIPEFASGGAFFLFHCQARGRPLFKDCESAPYVLRMRKLQQLLYCMLITLDERRHNV 262
Query: 34 QFHLFSV 14
F ++ V
Sbjct: 263 PFRIYKV 269
>AE014134-3304|AAF53935.2| 276|Drosophila melanogaster CG14402-PA
protein.
Length = 276
Score = 89.0 bits (211), Expect = 7e-18
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 17/247 (6%)
Frame = -3
Query: 703 PWSRMNSLNDLGFERKTPKTMWKDWDIEFPGDLYSLWGTLHLM---------DTKFDEDH 551
PWSR+ N G RK + +++E L+SLWG+ + ++ +
Sbjct: 28 PWSRLLEHNAEGCLRKRSGEKEEHYEVEISNHLWSLWGSTQQVKPGENSSSSESGSERTS 87
Query: 550 RGKQYLATCVIALVMVQACNISAWTSNFLDGIVEIGDKYH-KSCLNKIGNKPNYELNVND 374
Q LA CV+A ++ +W S+ LD I+ G Y+ +S + EL +
Sbjct: 88 PPGQALACCVLACCAGSFQSLDSWNSSALDKIMSNGRGYYDESLATRQHWDRTGELCLEC 147
Query: 373 LDSK-FEDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFEKSNQ-GLLISPAKNL 200
L++ F D + F V E + G Y+ +L AL FF + Q G+L + L
Sbjct: 148 LNTTCFLD--GHEFWVDIEKLCTGKLYSRTK---SLGSALSKFFGQHLQTGILQLRDQAL 202
Query: 199 AFG-----KSGNSYFMFDCQSYGAPVFCPGRGAAYILKCESLNRLIYCITMTLNIRRHGQ 35
AFG SG ++F+F CQ+ G P+F A Y+L+ L +L+YC+ +TL+ RRH
Sbjct: 203 AFGFIPEFASGGAFFLFHCQARGRPLFKDCESAPYVLRMRKLQQLLYCMLITLDERRHNV 262
Query: 34 QFHLFSV 14
F ++ V
Sbjct: 263 PFRIYKV 269
>BT023228-1|AAY55644.1| 514|Drosophila melanogaster IP02827p
protein.
Length = 514
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 802 FKPDNNPNLPYLKRRKNRPLVDEKMYWLNIEMLPWSRMNSLN 677
FK PN+ +++ K DE M LN+ +L W ++N+++
Sbjct: 58 FKNKETPNMRFIEALKAHEFADEMMSLLNVPLL-WQQLNAMD 98
>BT023216-1|AAY55632.1| 514|Drosophila melanogaster IP02927p
protein.
Length = 514
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 802 FKPDNNPNLPYLKRRKNRPLVDEKMYWLNIEMLPWSRMNSLN 677
FK PN+ +++ K DE M LN+ +L W ++N+++
Sbjct: 58 FKNKETPNMRFIEALKAHEFADEMMSLLNVPLL-WQQLNAMD 98
>AE014297-1238|AAF54586.1| 559|Drosophila melanogaster CG6633-PA
protein.
Length = 559
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 802 FKPDNNPNLPYLKRRKNRPLVDEKMYWLNIEMLPWSRMNSLN 677
FK PN+ +++ K DE M LN+ +L W ++N+++
Sbjct: 103 FKNKETPNMRFIEALKAHEFADEMMSLLNVPLL-WQQLNAMD 143
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,677,636
Number of Sequences: 53049
Number of extensions: 799071
Number of successful extensions: 1727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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