Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a24
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical ... 31 1.00
U80442-2|AAB37664.2| 238|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 28 7.0
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 7.0
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 28 7.0
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 7.0
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 7.0
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 7.0
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 7.0
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 7.0
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 28 9.3
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 28 9.3
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 28 9.3
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 28 9.3
AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical ... 28 9.3
>AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical
protein Y38A10A.2 protein.
Length = 463
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 485 TYVASLNHDECYNTRREVLFSSMVFVEFRIHKMKCSPQRIQITRKFYVPI 634
T++ N+ YN +VL + ++EF I ++ P++I F+V +
Sbjct: 365 TWIEERNYTSVYNLNEKVLNGTEEYIEFLIFGVRAFPKKINRLGNFFVNV 414
>U80442-2|AAB37664.2| 238|Caenorhabditis elegans Hypothetical
protein T20F5.3 protein.
Length = 238
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 255 TNALLKLKRSGNKL*KNPNMIFSNLTEN 338
T+A++ K+ + KNP +FSNL EN
Sbjct: 27 TSAVVNAKKKADNKKKNPPAVFSNLEEN 54
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 226 LLISPAKNLAFGKSGNSYFMFDCQSYGAP 140
++ISP+KN K + +F+C++ GAP
Sbjct: 41 VIISPSKNAIIHKKVGADLIFECKAEGAP 69
>Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical
protein R13G10.2 protein.
Length = 824
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 57 RVIVMQYISLLRLSHFKMYAAPLPGQKTGA 146
+V++ +S+L+ +H KM+ PLP +K A
Sbjct: 607 KVVITTSLSVLKSNHSKMFVPPLPIEKQKA 636
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
complex protein protein10, isoform b protein.
Length = 1189
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 565 FDEDHRGKQYLATCVIALVMVQACNISAWTSNFLDGIVEIGDKYHK 428
++ D GK + C+ L +QA + W G+ E D Y K
Sbjct: 841 YEWDQDGKNHSINCLDGLNWIQALGLHVWYLRAWTGLEESYDAYQK 886
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPD----RFNLSKALVYFFEKSNQGLLISPAKNLAFG 191
ED++ + K ENII F NL+P+ R + K K++ +LI K F
Sbjct: 238 EDLWDLNERDKAENIIPSFIENLIPEVEGYRRKIKKNPEAAIPKNHPSILIPIFKTYKFT 297
Query: 190 -KSGNSY-FMFDCQSYGAP 140
+G Y MFD + AP
Sbjct: 298 LLAGGCYKLMFDLLQFVAP 316
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 685 SLNDLGFERKTPKTMWKDWD---IEFPGDLYSLWGTLHLMDTKF 563
S++ + FE+ + + WD E+P L++LW L+ + K+
Sbjct: 268 SVSHVPFEKSLVEPEFGIWDYAKFEYPSQLHALWTALYAFEEKY 311
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 685 SLNDLGFERKTPKTMWKDWD---IEFPGDLYSLWGTLHLMDTKF 563
S++ + FE+ + + WD E+P L++LW L+ + K+
Sbjct: 353 SVSHVPFEKSLVEPEFGIWDYAKFEYPSQLHALWTALYAFEEKY 396
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFE--KSNQGLLISPAKNLAFGKS 185
+++FP + SV+ NI++G F L L+ ++++ +S G +S + +GK
Sbjct: 781 KELFPGTVSVQPRNILYGDFREWLETTTPLTLPELWYWSYIESRYGCALSQKSKVIYGKM 840
Query: 184 GNSYFMFDCQSYG 146
+ + +S G
Sbjct: 841 CTGDELLNIESLG 853
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -3
Query: 358 EDMFPYSFSVKFENIIFGFFYNLLPDRFNLSKALVYFFE--KSNQGLLISPAKNLAFGKS 185
+++FP + SV+ NI++G F L L+ ++++ +S G +S + +GK
Sbjct: 781 KELFPGTVSVQPRNILYGDFREWLETTTPLTLPELWYWSYIESRYGCALSQKSKVIYGKM 840
Query: 184 GNSYFMFDCQSYG 146
+ + +S G
Sbjct: 841 CTGDELLNIESLG 853
>AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical
protein C24G6.6 protein.
Length = 527
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 60 VIVMQYISLLRLSHFKMYAAPLPGQKTGA 146
+IV + +L+ H KM+ PLP QK A
Sbjct: 284 IIVTSSLGVLKKYHHKMFTPPLPRQKIEA 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,732,324
Number of Sequences: 27780
Number of extensions: 449077
Number of successful extensions: 1206
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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