Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a23
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 36 0.023
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 36 0.023
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 31 0.64
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 31 1.1
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 30 2.0
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 2.6
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 29 3.4
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 29 3.4
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 29 3.4
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 29 3.4
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 4.5
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 4.5
AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical ... 29 4.5
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 6.0
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 36.3 bits (80), Expect = 0.023
Identities = 37/147 (25%), Positives = 62/147 (42%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMK 315
P S T S +S++SE P SST G+T+ S + + S +S V
Sbjct: 537 PSGSSTEPSGSSDSSSSE---LPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSS 593
Query: 314 PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFES 135
A+ + S S + + T+ G+I+ EY WS C D S +V + + F+
Sbjct: 594 EEPNASSNSVSTETSPGSSDE-TTIGVIEETT--TEYTWSTCNDCSQINVQLFNGNPFDD 650
Query: 134 RKGSRAAMNTLSKRELFPMNYLCTPHE 54
+ + +N S + + + C P E
Sbjct: 651 ---ASSVLNRYSASGCYYVQFFCRPIE 674
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 36.3 bits (80), Expect = 0.023
Identities = 37/147 (25%), Positives = 62/147 (42%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMK 315
P S T S +S++SE P SST G+T+ S + + S +S V
Sbjct: 537 PSGSSTEPSGSSDSSSSE---LPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSS 593
Query: 314 PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFES 135
A+ + S S + + T+ G+I+ EY WS C D S +V + + F+
Sbjct: 594 EEPNASSNSVSTETSPGSSDE-TTIGVIEETT--TEYTWSTCNDCSQINVQLFNGNPFDD 650
Query: 134 RKGSRAAMNTLSKRELFPMNYLCTPHE 54
+ + +N S + + + C P E
Sbjct: 651 ---ASSVLNRYSASGCYYVQFFCRPIE 674
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 36.3 bits (80), Expect = 0.023
Identities = 37/147 (25%), Positives = 62/147 (42%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMK 315
P S T S +S++SE P SST G+T+ S + + S +S V
Sbjct: 537 PSGSSTEPSGSSDSSSSE---LPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSS 593
Query: 314 PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFES 135
A+ + S S + + T+ G+I+ EY WS C D S +V + + F+
Sbjct: 594 EEPNASSNSVSTETSPGSSDE-TTIGVIEETT--TEYTWSTCNDCSQINVQLFNGNPFDD 650
Query: 134 RKGSRAAMNTLSKRELFPMNYLCTPHE 54
+ + +N S + + + C P E
Sbjct: 651 ---ASSVLNRYSASGCYYVQFFCRPIE 674
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 36.3 bits (80), Expect = 0.023
Identities = 37/147 (25%), Positives = 62/147 (42%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMK 315
P S T S +S++SE P SST G+T+ S + + S +S V
Sbjct: 537 PSGSSTEPSGSSDSSSSE---LPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSS 593
Query: 314 PTIRATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPWSPCTDMSGTDVYPSSVDTFES 135
A+ + S S + + T+ G+I+ EY WS C D S +V + + F+
Sbjct: 594 EEPNASSNSVSTETSPGSSDE-TTIGVIEETT--TEYTWSTCNDCSQINVQLFNGNPFDD 650
Query: 134 RKGSRAAMNTLSKRELFPMNYLCTPHE 54
+ + +N S + + + C P E
Sbjct: 651 ---ASSVLNRYSASGCYYVQFFCRPIE 674
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S A +S S T+ P SS++YG++TP S SS ++ T+ ++ S +
Sbjct: 156 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTP--SASSSSSGTMSTNSGSTGST 213
Query: 326 HVMKPTIRATQSMSSGTLSS 267
+ P +T S+ SS
Sbjct: 214 VTVAPVSSSTFGSSTPIASS 233
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + + +
Sbjct: 218 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTAT 277
Query: 326 HVMKPTIRATQSMSSGTLSS 267
V + S S + SS
Sbjct: 278 IVPGSSSSVGSSTQSASPSS 297
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S A +S S T+ P SS++YG++TP S SS ++ T+ ++ S +
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTP--SASSSSSGTMSTNSGSTGST 420
Query: 326 HVMKPTIRATQSMSSGTLSS 267
+ P +T S+ SS
Sbjct: 421 VTVAPVSSSTFGSSTPIASS 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTAT 484
Query: 326 HVMKPTIRATQSMSSGTLSS 267
V + S S + SS
Sbjct: 485 IVPGSSSSVGSSTQSASPSS 504
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S A +S S T+ P SS++YG++TP S SS ++ T+ ++ S +
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTP--SASSSSSGTMSTNSGSTGST 420
Query: 326 HVMKPTIRATQSMSSGTLSS 267
+ P +T S+ SS
Sbjct: 421 VTVAPVSSSTFGSSTPIASS 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -2
Query: 494 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 327
P SS T+ S+ + +S++S T+T SS++YG++TP S SS T + + + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTAT 484
Query: 326 HVMKPTIRATQSMSSGTLSS 267
V + S S + SS
Sbjct: 485 IVPGSSSSVGSSTQSASPSS 504
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.64
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = -2
Query: 512 LSMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLN 333
L ++TP S+ T A S N T TP + + T S S+ + + S N
Sbjct: 161 LQQLTTPRSARTSTRAA--SGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVTPGTSSN 218
Query: 332 ESHVMKPTIRATQSMSSGTLS 270
+ PTIR QS GT S
Sbjct: 219 HRSRLPPTIRVPQSEPIGTRS 239
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 455 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRAT-QSMSSG 279
+ E T T +SST+ ATTP S +S+ T T + + +PT A S+G
Sbjct: 641 TTTDEPTTTTESSTTGKATTPELSTTSEETTTTELKITTEGSTTTEEPTTTAIFAEASTG 700
Query: 278 TLSSWTLESFTST 240
++ T E TST
Sbjct: 701 IIT--TDEETTST 711
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = -2
Query: 473 DSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVM---KPTIR 303
+S+ +S+ + PK++ S A++ V SK L S SL++S KPT
Sbjct: 733 ESSTPSSSTQQSISKPKATASSTASSAILQVVSK-----LSSVASLDKSAAAVDKKPTKT 787
Query: 302 ATQSMSSGTLSSWTLESFTSTGLIDSDILKVEYPW 198
+ W + T++ I SD+L +E P+
Sbjct: 788 VLSQGTPYRWKEWRIVRGTTSLFIWSDVLLIELPF 822
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -2
Query: 503 ISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESH 324
+ST + T + + T TP ++T+ TTP + ++ T T ES + S
Sbjct: 251 VSTTSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTPTTTTTTPTT-TTTESTTTETTS- 308
Query: 323 VMKPTIRATQSMSSGTLSSWTLESFTST 240
PT T ++ T S+ T ++ T T
Sbjct: 309 TTTPTTTTTAPTTTTTASTTTFKTTTIT 336
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 333
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 158 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 217
Query: 332 ESHVMKPT 309
+ PT
Sbjct: 218 RYPIAPPT 225
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 333
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 196 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 255
Query: 332 ESHVMKPT 309
+ PT
Sbjct: 256 RYPIAPPT 263
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 333
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 196 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 255
Query: 332 ESHVMKPT 309
+ PT
Sbjct: 256 RYPIAPPT 263
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = -2
Query: 494 PWSSETWDSAVFNSANSEKTLTPKSST-----SYGATTPF-FSVSSKNTLTLLESAVSLN 333
P SSE +D++V +S+ +TP SYGA PF ++++ + T + S+ +L
Sbjct: 158 PSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLA 217
Query: 332 ESHVMKPT 309
+ PT
Sbjct: 218 RYPIAPPT 225
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Frame = -2
Query: 434 LTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSWTLE 255
L+ S+ + + + + +++ ++L + S VM T + ++ S L+ T+
Sbjct: 366 LSRGSTFRFPSKRVYREIEEEDSKSILFDKSIMETSAVMNETTTSNENEES-ILNCSTIS 424
Query: 254 SFTSTG--LIDSDILK----VEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLSK 96
+ S+G ++ D+L+ VE PW + T V+ ++ + S S N LSK
Sbjct: 425 APLSSGSGVVRYDLLRQTPRVEQPWLKQNSLKVTTVHDNTASSSSSPDNSETQNNNLSK 483
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Frame = -2
Query: 434 LTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSWTLE 255
L+ S+ + + + + +++ ++L + S VM T + ++ S L+ T+
Sbjct: 358 LSRGSTFRFPSKRVYREIEEEDSKSILFDKSIMETSAVMNETTTSNENEES-ILNCSTIS 416
Query: 254 SFTSTG--LIDSDILK----VEYPWSPCTDMSGTDVYPSSVDTFESRKGSRAAMNTLSK 96
+ S+G ++ D+L+ VE PW + T V+ ++ + S S N LSK
Sbjct: 417 APLSSGSGVVRYDLLRQTPRVEQPWLKQNSLKVTTVHDNTASSSSSPDNSETQNNNLSK 475
>AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.3 protein.
Length = 688
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 94 LLLRVFIAALLPFLDSNVSTLLGYTSVPLISVQGLQGYSTFRISESMRPVLVKLSRVHEL 273
LL R+ +A LL + + + L V +S+Q L + ++ +RP +K + +L
Sbjct: 479 LLFRLAVAQLLDVISTTLQQLDNQIPVKKLSIQVLNQETLIQLLSLLRPSSLKTIEIRKL 538
Query: 274 K 276
K
Sbjct: 539 K 539
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -2
Query: 458 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSG 279
+S S +T TP + S TTP S+ +++ ++ S PT +T S+
Sbjct: 312 SSTGSTQTTTPSTEPSTTITTPMEQSSTVSSVQKTRTSEDKPSSSTTVPTSASTSESSTS 371
Query: 278 TLSSWTLESFTST 240
+ + T S T++
Sbjct: 372 SPMAETSSSSTTS 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,562
Number of Sequences: 27780
Number of extensions: 303681
Number of successful extensions: 775
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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