Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a23
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.9  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -2

Query: 458 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSG 279
           + A S    TP + T+ GATT   + S+  T     SAV          T  AT +M++G
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAV--------VATSNATAAMTTG 257

Query: 278 T 276
           T
Sbjct: 258 T 258


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 632 ISVWEWPYGRTLCCISFLVPF*LAVWITDIIEI 730
           I++ E    R+   +SFL PF   +WI  ++ +
Sbjct: 544 ITILEKKPSRSSTLVSFLQPFSNTLWILVMVSV 576


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 118 ALLPFLDSNVSTLL 159
           AL PFL S+VST++
Sbjct: 1   ALSPFLSSSVSTVI 14


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 313 GFIT*LSLSETADSNNVKVFL 375
           GF+T  S     D+N +++F+
Sbjct: 192 GFLTSCSFDYLTDTNEIRIFV 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,636
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)