Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a21
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 56 6e-09
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 47 3e-06
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.21
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.21
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 30 0.36
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 0.84
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 29 1.1
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 1.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 1.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.6
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|... 27 2.6
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 3.4
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 4.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 4.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.5
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 4.5
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 5.9
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 5.9
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.9
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 7.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 7.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 7.8
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 7.8
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 7.8
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 7.8
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 56.0 bits (129), Expect = 6e-09
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Frame = -1
Query: 716 GVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDL-PEQLTV 540
G PGAG T A I G + G++ R + R T G+ A+KI L + +
Sbjct: 10 GPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKE-AKKIMDQGGLVSDDIVT 68
Query: 539 DLIKEEMLSQPEAK-GFILVGFPRN----SRMSDIFSRQVKWPEKVVALEVDNEVAAARL 375
+IK+E+L+ PE K GFIL GFPR +++ + V+ L+VD+E+ R+
Sbjct: 69 GMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRI 128
Query: 374 QNKLSELGRPES 339
+L G S
Sbjct: 129 TGRLVHPGSGRS 140
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 47.2 bits (107), Expect = 3e-06
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Frame = -1
Query: 731 VIFVNGVPGAGNQTVAETISD-ITGYNMIRPGELERVEATRDTVR-GRMVAEKIRTLEDL 558
VIFV G PGAG T + +++ + I G+ R E R + G ++ E I+ + +
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 557 PEQLTVDLIKEEMLSQPEAKG---FILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVA 387
P ++T+ L++ +M + KG F++ GFPR + F + V + + E
Sbjct: 64 PMEITISLLETKM-KECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETM 122
Query: 386 AARLQNKLSELGRPESEINAARQ 318
RL ++ GR + I + ++
Sbjct: 123 LKRLIHRGKTSGRSDDNIESIKK 145
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 743 RRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPGEL 633
R LP I + G PG G T+AE +++ T I G++
Sbjct: 6 RELPNIIICGTPGTGKTTLAEQVAETTELENICIGDV 42
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 251 VDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 87
+ S+ + ALA+ L ++ + PV P+ P +SAP PP V P P
Sbjct: 1664 IRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 30.3 bits (65), Expect = 0.36
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -1
Query: 404 VDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNV-QKRFARHVVTVDSTDNRT 228
+DN A + +++EL R +E+N R I + + + + K F + +V + +
Sbjct: 216 IDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFTKMFTKDIVRLREVPDAW 275
Query: 227 ALASTLKEI-LSDTMEKNKRPVSP 159
S KE+ S+ +E ++ SP
Sbjct: 276 TYRSPPKELSYSELLENAEKATSP 299
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 29.1 bits (62), Expect = 0.84
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = -1
Query: 578 IRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVD 399
+ TL LP+ + +D ++EMLS+ A+ G + ++ D +Q++ ++ L+
Sbjct: 143 LETLPALPDAIDMDEDEKEMLSEARARLANTQG--KKAKRKD-REKQLELTRRLSHLQKR 199
Query: 398 NEVAAARLQNKLSELGRPESEINAA 324
E+ AA + KL + E + NA+
Sbjct: 200 RELKAAGINIKLFRRKKNEMDYNAS 224
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 281 QKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVL 117
+KR V+ S D T TL++++ K P PRPPS S PA+L
Sbjct: 24 EKRLIEQVIRETSKDPVTQQECTLEDLVPV-----KVPDFVRPRPPSATSLPALL 73
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 248 DSTDNRTALASTLKEIL-SDTMEKNKRPVSPE-PRPPSTVSAPAVLPPSAEVQPTPDTAD 75
DST N T L+ IL S +E + V+ P+PPS + A +PP A T + D
Sbjct: 346 DSTSNSTEYDDQLQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAPRNLTNASVD 405
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 785 DIEVVEDLYDMSPVRRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPG 639
D+ + + D S VRR P FVNGV N I D++G ++ G
Sbjct: 430 DVVLKGSIPDTSSVRRNPPCFVNGVESI-NVDFEARIFDVSGDRLVLAG 477
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 173 RPVSPEPRPPSTVSAPAVLPPSAEVQPTP 87
+P +P PPS S P+ +PP P P
Sbjct: 176 QPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 263 HVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVS 132
H T+D++ + T+LAST +S + + K + E P ST S
Sbjct: 284 HTSTLDASSSNTSLASTGPMTVSSSTVERKGKEASEVNPNSTSS 327
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 188 MEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 87
M+ + P S EP S V+AP V P++ V P P
Sbjct: 137 MDASSAPASQEPSA-SGVNAPTVSAPNSMVSPPP 169
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 2.6
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 545 TVDLIKEEMLSQPEAKGFILVG--FPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQ 372
TV + +E P LV S + + S+ ++ EKV ALE D E+ +Q
Sbjct: 512 TVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQ 571
Query: 371 NKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTVDSTDNRTALASTLKEILS 195
++S NA ++ + ++KN++ + +S N L LKE+L+
Sbjct: 572 YQIS---------NAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNL---LKEMLA 618
>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 663 RLQHDPAGRTGKS--RGYKGHGQRENGRRKDSNARGST 556
R+ PA GK+ RG+KG GQR R K G T
Sbjct: 16 RVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQT 53
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.1 bits (57), Expect = 3.4
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = -1
Query: 407 EVDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTV--DSTDN 234
E+ L N LS + P+S I+ +++R K+ + + F +V + + +
Sbjct: 378 EIGRRKLLKSLTNSLSTMALPDSLISLHIELLR----KLCSSENDFCSLLVEIITEVFEQ 433
Query: 233 RTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTAD 75
+ T ++ S+ E NK E S S LPP+ +P PD D
Sbjct: 434 GHSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMD 486
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 590 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEA 501
+ E +R DLPE L + L KEE L P++
Sbjct: 781 IHEVLRLRFDLPENLKLQLNKEEALLPPKS 810
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 170 PVSPEPRPPSTVSAPAVLPPSAEVQPTPDTA 78
P P P +V+AP V PS+ + P P A
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 812 IKWVAFFSKDIEVVEDLYDMSPVRRLPVIFVNGV 711
+ W++ + KD+ VV +++DM P I+V +
Sbjct: 214 VYWISLY-KDVYVVSEIFDMIQYEVFPAIWVYSI 246
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = -1
Query: 218 STLKEILSDTMEKNKRPV--SPEPRPPSTV-----SAPAVLPPSAEVQPTP 87
S L +SDT+E+ ++ + SP P PP+ + AP +PP A + P
Sbjct: 711 SPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP 761
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 197 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQ 96
S+T++ + P+P +T SAP+ P V+
Sbjct: 277 SETVKSEQETAVEHPKPTATTSAPSASPTGVPVE 310
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.9
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Frame = -1
Query: 701 GNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKI--RTLEDLPEQLTV---D 537
G QT+ + T YN++R ELE R ++++ ++ D+ + T +
Sbjct: 125 GKQTLFGRVVGDTIYNVVRISELELDANQRPVFPPKIISTEVIDNYFTDIKPRSTKEERE 184
Query: 536 LIKEEMLSQPEAK--GFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQNKL 363
I E+ Q + K +L RN + F +V P +V + + +R +
Sbjct: 185 KIANELAHQEKQKERNKLLKSGRRNKAVLS-FGDEVDMP--IVKKPLRQKTPVSRSSDTT 241
Query: 362 SELGR----PESEINAARQIIRDAAHKVKNVQKRFARHVVTVDSTDNRTALASTLKEI 201
+EL + S I++ + K +AR V T+D+ N ++ + +EI
Sbjct: 242 TELSKDLISSSSSIHSTYSSAQTGLTSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEI 299
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 284 VQKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRP 168
V +R++ V +STD A+ + + E L DT+ N P
Sbjct: 257 VAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIPDNYNP 295
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -1
Query: 731 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPE 552
++ + G+ GAG T+A I+ GY ++ + + T TV + V+ I L
Sbjct: 418 IMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD--DRTAHTVHEK-VSSAISNHSALSS 474
Query: 551 QLTVDLIKE 525
Q T ++ E
Sbjct: 475 QPTCVIVDE 483
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 728 IFVNGVPGAGNQTVAETISDITGYNMI 648
+ ++G PG G T A ++ + GY+++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAKLEGYDVL 438
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 812 IKWVAFFSKDIEVVEDLYDMSPVRRLPVIFVNGV 711
+ W++ + KD+ VV +++DM P I+V +
Sbjct: 214 VYWISLY-KDVYVVSEIFDMIQYEVSPAIWVYSI 246
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 812 IKWVAFFSKDIEVVEDLYDMSPVRRLPVIFVNGV 711
+ W++ + KD+ VV +++DM P I+V +
Sbjct: 214 VYWISLY-KDVYVVSEIFDMIQYEVSPAIWVYSI 246
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 812 IKWVAFFSKDIEVVEDLYDMSPVRRLPVIFVNGV 711
+ W++ + KD+ VV +++DM P I+V +
Sbjct: 186 VYWISLY-KDVYVVSEIFDMIQYEVSPAIWVYSI 218
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 236 NRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPP 111
N+T+ + +KE+ D ++ K P P S +S P + PP
Sbjct: 1011 NQTSDSVLVKELAKDLLKYLKVPQGPINEHKSPISKPHMPPP 1052
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 197 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTADE 72
S N SP VS P ++ P+ +PTP +DE
Sbjct: 513 SQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDE 554
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 176 KRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDT 81
K SP P PP++V V PS+ V + T
Sbjct: 83 KSAASPAPNPPASVPEKKVEAPSSTVAESTST 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,971
Number of Sequences: 5004
Number of extensions: 65252
Number of successful extensions: 282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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