Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a20
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   139   1e-34
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   3.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.2  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  139 bits (336), Expect = 1e-34
 Identities = 60/82 (73%), Positives = 70/82 (85%)
 Frame = -1

Query: 338 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 159
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 158 TILCQPTGGRARLTEGCSFRRK 93
           ++LCQPTGG+ARL EGCSFRRK
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
 Frame = +3

Query: 177 HHSLCVTKNCCNLVTARALNIHEIRVRMWH*PLK------------LMFPPLRRRGRMQQ 320
           +H+L   ++ C L  ++ L+ H I +R W   +K            ++F P+ +  ++Q 
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKWGMDIKTKKNFFFIDGFSMLFAPISKPSKVQA 96

Query: 321 INCERHGYSFNAP 359
              + H  S  AP
Sbjct: 97  PETKNHIKSVFAP 109


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 264 H*PLKLMFPPLRRRGRMQQINCERHGYSFNA 356
           H  LK  +  L   G+MQ+  C++ G  F A
Sbjct: 256 HASLKKTYMRLLNSGKMQKKECDKKGKFFEA 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,923
Number of Sequences: 5004
Number of extensions: 23796
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)