Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a18
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 32 0.47
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 32 0.47
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 32 0.63
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 31 0.83
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 31 1.4
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 31 1.4
08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414... 31 1.4
09_04_0422 + 17422080-17422217,17422886-17423067,17423145-174233... 30 1.9
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 30 1.9
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 30 2.5
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 4.4
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 29 4.4
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073 29 5.8
06_03_1259 - 28800954-28802468 29 5.8
05_01_0103 + 686770-687017,687120-687270 29 5.8
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 28 7.7
05_07_0240 + 28606345-28607316 28 7.7
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 28 7.7
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480... 28 7.7
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 32.3 bits (70), Expect = 0.47
Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Frame = -1
Query: 810 PTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG--YLRLQMGDEMSKRKKFMFMT 637
P++W + K C +R T R ++ + FG Y+ + D+ SK + +
Sbjct: 310 PSKWNIIKLALIDSSCGSRVITTTRIRQVANEVAKEFGDVYMMEPLSDDNSKTLFYNRIF 369
Query: 636 WVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQ-FKDALNRAGGANYGT 460
V N N++ +T+K I+K + L + + + +D+ ++ ++GT
Sbjct: 370 GVACNGPTDNQSVEATEK-ILKRC---GGIPLSIITIASLLVDKPAREWSVIYDSISFGT 425
Query: 459 GVRDL*IENVCPALATWNFKRILSLSFYYINNECKDTILYIKIF 328
G ++ ++N+ ++ILS S+Y++ + K +LY+ I+
Sbjct: 426 GDQNEAVQNM---------RKILSFSYYHLPSYLKTCMLYLSIY 460
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -1
Query: 753 GSDFTEFRTQFSDDERAFGYLRLQ-MGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAI 577
G + +F DE + + DE ++ K F++W V ++ ++ K
Sbjct: 69 GESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDR 128
Query: 576 IKDIISNFAVELQLENQSEIDIDQFK 499
K + VELQ + SE+ +D K
Sbjct: 129 FKRELDGIQVELQATDPSEMSMDIVK 154
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N RILSLSF+ + N K +LY+ IF
Sbjct: 402 NMNRILSLSFHDLPNHLKTCLLYLSIF 428
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -1
Query: 675 DEMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSEIDIDQF 502
+E ++ K F+ W P+VS I RAKM +T K + + E+Q + SE+DI+
Sbjct: 83 EENCQKSKIFFVAW-SPSVSRI-RAKMLYATSKERFRRELDGVHYEIQATDPSELDIELL 140
Query: 501 KD 496
++
Sbjct: 141 RE 142
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N +RILS +Y++ + K +LYI IF
Sbjct: 400 NIRRILSFCYYHLPSHLKTCLLYISIF 426
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 405 FKRILSLSFYYINNECKDTILYIKIF 328
F+RIL LSFY + ++ K LY+ IF
Sbjct: 349 FRRILMLSFYDLPHDLKTCFLYLSIF 374
>08_01_0470 -
4140669-4140728,4142004-4142270,4142526-4144557,
4144763-4145550
Length = 1048
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N +RILS S+Y + + K ILYI IF
Sbjct: 392 NTRRILSFSYYDLPSHLKPCILYISIF 418
>09_04_0422 +
17422080-17422217,17422886-17423067,17423145-17423331,
17423602-17423769,17423915-17424217,17424312-17424497
Length = 387
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 502 ELVDVYLRLIFKLQLHSKVRYDVLDDSFVGGHLGSVD 612
++VD+++ +FK+ LHS+ Y + D + G L SVD
Sbjct: 303 DMVDIHIAAVFKV-LHSEQNYLRIQDDTLEGTLASVD 338
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 481 CPIECILELVDVYLRLIFKLQLHSKV--RYDVLDDSFVGGHLGSVDHRHVRSYPRHEHKF 654
CP I+ +V V+ ++ QLH + R+ +L VG + G + V S H H
Sbjct: 501 CPGVPIVPMVSVFFNMLLFAQLHEEAWYRFVILSLLAVGVYAGYGQYHAVPSSSDHPHPA 560
Query: 655 LAFRHLVS 678
+A+ + S
Sbjct: 561 VAYHGIPS 568
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N KRILS S+Y + + K+ +LY+ +F
Sbjct: 681 NTKRILSFSYYDLPSHLKNCLLYLSMF 707
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N +RILSLS+Y + K +LY+ IF
Sbjct: 414 NTRRILSLSYYDLPLHLKPCLLYLSIF 440
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N +RILSLS+Y + K +LY+ IF
Sbjct: 423 NTRRILSLSYYDLPLHLKPCLLYLSIF 449
>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
Length = 900
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 408 NFKRILSLSFYYINNECKDTILYIKIF 328
N +RILS S+Y + + K +LY+ IF
Sbjct: 353 NTRRILSFSYYDLPSHLKACLLYLSIF 379
>06_03_1259 - 28800954-28802468
Length = 504
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 601 GSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRAHY 771
G R +PR +H+ L H + H+ E ++ RE R A PG H+
Sbjct: 151 GGEPRRLELQFPR-QHRELIHGHYIQHVIDEATKMRLRSRERRLYTNRAAAPGDDHH 206
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -1
Query: 675 DEMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSEIDIDQF 502
+E ++ K F+ W P+ S + R+KM ++ K K + VELQ + +E+ +D
Sbjct: 70 EENCQKSKIFFIAW-SPDTSRV-RSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVI 127
Query: 501 KDALN 487
+ N
Sbjct: 128 RGRAN 132
>11_06_0227 +
21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 417 ATWNFKRILSLSFYYINNECKDTILYIKIF 328
A N ++ILS S+Y++ + K +LY+ I+
Sbjct: 405 AVQNTRKILSFSYYHLPSYLKTCMLYLSIY 434
>05_07_0240 + 28606345-28607316
Length = 323
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 700 ECAFIIRELRAELREVATPGRAHYPGAFKLEHRP 801
E A I+ LRA +AT AH P AF+ HRP
Sbjct: 73 EVAAAIQHLRAADPALATVIDAHDPPAFQCPHRP 106
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 672 EMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSE 520
E ++ K F+ W P+ S I RAKM ST K IK + F E+Q + +E
Sbjct: 84 ENVQKSKIFFIAW-SPSTSRI-RAKMLYSTSKDRIKQELDGFHYEIQATDPTE 134
>03_05_0502 +
24947444-24947665,24947768-24947823,24947929-24948099,
24948508-24948631,24949086-24949142,24949216-24949312,
24949619-24949826,24950637-24950697,24950793-24950846
Length = 349
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 605 RLITDTFGPTHVMNINFLRLDISSPI-CNLRYPNARSSSENCVRNSVKSLPLAEH 766
RL++ HV+N N LD+++P+ NL PN + + V+ L L +H
Sbjct: 237 RLVSFKGKTIHVLNKNEHALDMAAPVHDNLGDPNGYTDDYSLVKKRTNVLLLGDH 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,511,423
Number of Sequences: 37544
Number of extensions: 449456
Number of successful extensions: 935
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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