Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a18
         (816 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2764|AAN09475.1|  146|Drosophila melanogaster CG6891-PB...   194   1e-49
AE014298-2763|AAF48881.1|  163|Drosophila melanogaster CG6891-PA...   194   1e-49
AY122215-1|AAM52727.1|  269|Drosophila melanogaster LP08941p pro...   192   5e-49
BT025824-1|ABF85724.1|  109|Drosophila melanogaster IP06047p pro...   107   2e-23
AE014298-2766|AAF48884.2|  109|Drosophila melanogaster CG6900-PA...   107   2e-23

>AE014298-2764|AAN09475.1|  146|Drosophila melanogaster CG6891-PB,
           isoform B protein.
          Length = 146

 Score =  194 bits (473), Expect = 1e-49
 Identities = 86/122 (70%), Positives = 105/122 (86%)
 Frame = -1

Query: 813 TPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTW 634
           T TEWAVFKF+GA+I+  ARG  F EFR QF D ERAFGY+R+QMGDEMSKRKKF+F+TW
Sbjct: 24  TDTEWAVFKFDGAQIIVHARGQCFEEFRQQFGDSERAFGYIRIQMGDEMSKRKKFIFLTW 83

Query: 633 VGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFKDALNRAGGANYGTGV 454
           +G  V VI RAKMSTDKA+IKD+++NFAVELQ   ++E+DI+ F++ALNRAGGANYGTG+
Sbjct: 84  IGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAELDIELFREALNRAGGANYGTGI 143

Query: 453 RD 448
           RD
Sbjct: 144 RD 145


>AE014298-2763|AAF48881.1|  163|Drosophila melanogaster CG6891-PA,
           isoform A protein.
          Length = 163

 Score =  194 bits (473), Expect = 1e-49
 Identities = 86/122 (70%), Positives = 105/122 (86%)
 Frame = -1

Query: 813 TPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTW 634
           T TEWAVFKF+GA+I+  ARG  F EFR QF D ERAFGY+R+QMGDEMSKRKKF+F+TW
Sbjct: 41  TDTEWAVFKFDGAQIIVHARGQCFEEFRQQFGDSERAFGYIRIQMGDEMSKRKKFIFLTW 100

Query: 633 VGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFKDALNRAGGANYGTGV 454
           +G  V VI RAKMSTDKA+IKD+++NFAVELQ   ++E+DI+ F++ALNRAGGANYGTG+
Sbjct: 101 IGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAELDIELFREALNRAGGANYGTGI 160

Query: 453 RD 448
           RD
Sbjct: 161 RD 162


>AY122215-1|AAM52727.1|  269|Drosophila melanogaster LP08941p
           protein.
          Length = 269

 Score =  192 bits (468), Expect = 5e-49
 Identities = 85/122 (69%), Positives = 104/122 (85%)
 Frame = -1

Query: 813 TPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTW 634
           T TEWAVFKF+GA+I+  ARG  F EFR QF D ERAFGY+R+QMGDEMSKRKKF+F+TW
Sbjct: 147 TDTEWAVFKFDGAQIIVHARGQCFEEFRQQFGDSERAFGYIRIQMGDEMSKRKKFIFLTW 206

Query: 633 VGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFKDALNRAGGANYGTGV 454
           +G  V VI RAKMSTDKA+IKD+++NFAVEL    ++E+DI+ F++ALNRAGGANYGTG+
Sbjct: 207 IGQEVGVIQRAKMSTDKALIKDVLNNFAVELHAGVEAELDIELFREALNRAGGANYGTGI 266

Query: 453 RD 448
           RD
Sbjct: 267 RD 268


>BT025824-1|ABF85724.1|  109|Drosophila melanogaster IP06047p
           protein.
          Length = 109

 Score =  107 bits (257), Expect = 2e-23
 Identities = 47/71 (66%), Positives = 61/71 (85%)
 Frame = -1

Query: 699 GYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSE 520
           GY+R QMGDEMSK KKF+F+TW+G  V VI RAKMSTDKA+IKD+++NFAVELQ   ++E
Sbjct: 23  GYIRNQMGDEMSKHKKFIFLTWIGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAE 82

Query: 519 IDIDQFKDALN 487
           +DI+ F++ALN
Sbjct: 83  LDIELFREALN 93


>AE014298-2766|AAF48884.2|  109|Drosophila melanogaster CG6900-PA
           protein.
          Length = 109

 Score =  107 bits (257), Expect = 2e-23
 Identities = 47/71 (66%), Positives = 61/71 (85%)
 Frame = -1

Query: 699 GYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSE 520
           GY+R QMGDEMSK KKF+F+TW+G  V VI RAKMSTDKA+IKD+++NFAVELQ   ++E
Sbjct: 23  GYIRNQMGDEMSKHKKFIFLTWIGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAE 82

Query: 519 IDIDQFKDALN 487
           +DI+ F++ALN
Sbjct: 83  LDIELFREALN 93


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,571,965
Number of Sequences: 53049
Number of extensions: 798862
Number of successful extensions: 2188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2188
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)