Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a18
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm rece...    31   0.75 
U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>AF101318-4|AAC69346.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 68 protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 259 NSLVIFIILCQIDHIFNHV*KFIIYFSKIHMLYNILQ 149
           NS +I + LC I  +F    + +IYF+ + M+++ L+
Sbjct: 22  NSFLILLTLCYIKEVFGAYKRMVIYFAALGMIFSGLE 58


>U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical
           protein F09E5.5 protein.
          Length = 796

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 520 LRLIFKLQLHSKVRYDVLDDSFVGGHLGSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVS 699
           L+ IF LQ   +   D LDD   GG+L  + H+H+    R   + LA  H +S    E  
Sbjct: 113 LKHIFNLQTTLQEIRDALDDEKSGGNL-LLAHKHIMDLERARDELLAEVHKMSGTNTEKE 171

Query: 700 ECAFI 714
           +   +
Sbjct: 172 QMLLV 176


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/104 (19%), Positives = 45/104 (43%)
 Frame = +2

Query: 488 LSASLNWSMSISD*FSSCNSTAKFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLD 667
           +S++L W  +I+    S   +    + S   A  +  ++R + D    + + + N + + 
Sbjct: 398 ISSNL-WKPTINSPTMSTTESTISPVASSPTASKLPFVSRKVDDVGAKSMITSSNVVSIS 456

Query: 668 ISSPICNLRYPNARSSSENCVRNSVKSLPLAEHTIRAPSNLNTA 799
           + +P+ N  Y N   + E    +   + PL      +PS  +T+
Sbjct: 457 VKAPVSNRIYSNYDKTDETTTDSMRSTAPLKPPITYSPSYTSTS 500


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/104 (19%), Positives = 45/104 (43%)
 Frame = +2

Query: 488 LSASLNWSMSISD*FSSCNSTAKFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLD 667
           +S++L W  +I+    S   +    + S   A  +  ++R + D    + + + N + + 
Sbjct: 441 ISSNL-WKPTINSPTMSTTESTISPVASSPTASKLPFVSRKVDDVGAKSMITSSNVVSIS 499

Query: 668 ISSPICNLRYPNARSSSENCVRNSVKSLPLAEHTIRAPSNLNTA 799
           + +P+ N  Y N   + E    +   + PL      +PS  +T+
Sbjct: 500 VKAPVSNRIYSNYDKTDETTTDSMRSTAPLKPPITYSPSYTSTS 543


>Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical
           protein Y48E1B.11 protein.
          Length = 190

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 388 RQYSFKIPCGKCGANIFYS*ISNASAVVRSP--CPIECILELVDVYL 522
           ++Y+F I   + GAN+ +  +     ++ SP     E   +LVD YL
Sbjct: 57  KKYNFNIQTAQLGANVLFGGVQQFGILIASPEDSQTETFRKLVDFYL 103


>Z48717-8|CAA88609.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.10 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -1

Query: 723 FSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVE 544
           + DD   F   R + GDE+   K       +GP + +  R  M   K ++ +I+ N+  E
Sbjct: 429 WGDDVNEFKPERWESGDELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFE 488


>Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.1 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = -1

Query: 723 FSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVE 544
           + DD   F   R + GDE+   K       +GP + +  R  M  +K ++  I+  +  +
Sbjct: 429 WGDDASEFKPERWETGDELFYAKGGYLPFGMGPRICIGMRLAMMEEKLLLTHILKKYTFD 488

Query: 543 LQLENQ 526
              E +
Sbjct: 489 TSTETE 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,040
Number of Sequences: 27780
Number of extensions: 423753
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)