Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a17
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0243 - 16791789-16793306                                         28   5.1  
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289...    27   6.7  
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571...    27   8.8  
05_01_0555 + 4867494-4867577,4868987-4869607                           27   8.8  

>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 431 RQGWKGESGGSARCGTPRGR 490
           R GW+G  G SA+    RGR
Sbjct: 446 RSGWRGSGGASAKTSPSRGR 465


>07_03_1268 + 25328448-25328506,25328589-25328768,25328872-25328974,
            25329095-25329119,25329587-25329614,25330603-25330755,
            25331339-25333421,25333666-25334983,25335256-25335339,
            25335756-25335769
          Length = 1348

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 171  PSSWSVRPY*QRSVCDGTFGDDDAAIPPGNSAP 269
            P+SWS RP+      D + GD  A  P G+ +P
Sbjct: 1170 PASWSTRPHLFAYANDNSDGDAFADSPNGSPSP 1202


>08_01_0662 +
           5714108-5714147,5714336-5715669,5716482-5716673,
           5716769-5716958,5717398-5717477
          Length = 611

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 431 RQGWKGESGGSARCGTPRGRL 493
           RQG KGE GGS     P  RL
Sbjct: 71  RQGQKGEPGGSGHAAAPVDRL 91


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 FRMFIFGASILLFLCPSSWSVRPY*QRSVCDGTFGDDDAAI 248
           F +F +    LLFLC S +   P     +  G  GDD AA+
Sbjct: 113 FVLFAYADLGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAV 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,984
Number of Sequences: 37544
Number of extensions: 211220
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)