Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a14
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 124 1e-28
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 124 1e-28
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 124 1e-28
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 124 1e-28
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 123 1e-28
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 123 2e-28
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 121 6e-28
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 118 4e-27
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 118 4e-27
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 118 4e-27
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 118 4e-27
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 118 4e-27
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 118 4e-27
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 118 5e-27
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 118 5e-27
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 116 2e-26
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 62 4e-10
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 62 4e-10
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 61 9e-10
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 60 1e-09
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 60 1e-09
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 42 7e-04
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 42 7e-04
AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine re... 29 5.5
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 28 7.3
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 28 7.3
AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine re... 28 7.3
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 7.3
AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine re... 28 7.3
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 124 bits (298), Expect = 1e-28
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 670 ETSDMQPGADDE 635
++ + DE
Sbjct: 438 DSMEDNGEEGDE 449
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 124 bits (298), Expect = 1e-28
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +
Sbjct: 377 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 436
Query: 670 ETSDMQPGADDE 635
++ + DE
Sbjct: 437 DSMEDNGEEGDE 448
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 124 bits (298), Expect = 1e-28
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 670 ETSDMQPGADDE 635
++ + DE
Sbjct: 438 DSMEDNGEEGDE 449
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 124 bits (298), Expect = 1e-28
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 670 ETSDMQPGADDE 635
++ + DE
Sbjct: 438 DSMEDNGEEGDE 449
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 123 bits (297), Expect = 1e-28
Identities = 55/72 (76%), Positives = 64/72 (88%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +
Sbjct: 383 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGL 442
Query: 670 ETSDMQPGADDE 635
+ +P +D+
Sbjct: 443 DAG--EPDEEDD 452
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 123 bits (296), Expect = 2e-28
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY+EV
Sbjct: 373 LSNTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 432
Query: 670 ETSDMQPGADDE 635
+ SD DDE
Sbjct: 433 D-SDANDNGDDE 443
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 122 bits (295), Expect = 2e-28
Identities = 54/71 (76%), Positives = 64/71 (90%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LDHKFDLMYSKRAFVHW+VGEGMEEGEF EAR+DLAALE+DY EV+
Sbjct: 381 LSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSR 440
Query: 670 ETSDMQPGADD 638
+T+D++ D+
Sbjct: 441 DTADLEEENDE 451
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 121 bits (292), Expect = 6e-28
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAI EAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE+DY+EV +
Sbjct: 378 LSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV 437
Query: 670 ETSD 659
++ D
Sbjct: 438 DSFD 441
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 118 bits (285), Expect = 4e-27
Identities = 51/64 (79%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LSNTTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 376 LSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 435
Query: 670 ETSD 659
++++
Sbjct: 436 DSNE 439
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 118 bits (284), Expect = 5e-27
Identities = 50/58 (86%), Positives = 57/58 (98%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEV 677
+SNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 384 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEI 441
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 118 bits (284), Expect = 5e-27
Identities = 50/58 (86%), Positives = 57/58 (98%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEV 677
+SNTTAIAEAW +LDHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 356 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEI 413
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 116 bits (280), Expect = 2e-26
Identities = 50/64 (78%), Positives = 61/64 (95%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
LS+TTAIAEAW +LD+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY+EV
Sbjct: 13 LSDTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGA 72
Query: 670 ETSD 659
++++
Sbjct: 73 DSNE 76
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 62.5 bits (145), Expect = 4e-10
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y +
Sbjct: 368 VGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQE 427
Query: 670 ETSDMQP 650
T++ +P
Sbjct: 428 ATAEDEP 434
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y +
Sbjct: 368 VGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
Query: 670 ETSDMQPGADD 638
T+D + D+
Sbjct: 428 ATADDEGEFDE 438
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 61.3 bits (142), Expect = 9e-10
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDE 680
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y E
Sbjct: 368 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
Query: 679 VAIETSDMQPGADDE 635
E G D +
Sbjct: 428 ATAEEDGELDGTDGD 442
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y +
Sbjct: 368 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
Query: 670 ETSD 659
+D
Sbjct: 428 AAAD 431
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y +
Sbjct: 368 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQE 427
Query: 670 ETSD 659
+D
Sbjct: 428 AAAD 431
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAI 671
+ N+TAI E + ++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y +
Sbjct: 368 VGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQE 427
Query: 670 ETSD 659
T++
Sbjct: 428 ATAE 431
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDE 680
++N+TAI E ++ +F ++ ++AF+HWY MEE EF++A DL + + Y++
Sbjct: 366 IANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLISEFQQYEK 422
Query: 679 V 677
V
Sbjct: 423 V 423
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDE 680
++N+TAI E ++ +F ++ ++AF+HWY MEE EF++A DL + + Y++
Sbjct: 366 IANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLISEFQQYEK 422
Query: 679 V 677
V
Sbjct: 423 V 423
>AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine
receptor, class j protein15 protein.
Length = 343
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CISLSYGILIIHFIYRYITLFFP 123
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFV 767
L+N+T++A + L K+D + SKRAF+
Sbjct: 376 LNNSTSVAPLFESLLSKYDKLRSKRAFI 403
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 850 LSNTTAIAEAWGKLDHKFDLMYSKRAFV 767
L+N+T++A + L K+D + SKRAF+
Sbjct: 376 LNNSTSVAPLFESLLSKYDKLRSKRAFI 403
>AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine
receptor, class j protein16 protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CVSLSYGILIIHFIYRYITLFFP 123
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 516 KYRINNFKSKAHSSSSDFVTRDKYTIAKVQIELSYKNDHNSSSAPGC 656
KYR + + S + + D+Y + Q E S K +HN+ AP C
Sbjct: 396 KYRKTSVSADP-KSHTPILMADEYKEPQKQGEFSSKKNHNTHQAPAC 441
>AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine
receptor, class j protein13 protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CISLSYGILVIHFIYRYIALFFP 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,716
Number of Sequences: 27780
Number of extensions: 387379
Number of successful extensions: 1022
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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