Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a13
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...   256   1e-68
U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    37   0.017
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   0.83 
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   3.3  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   3.3  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   3.3  
Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    28   7.7  

>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score =  256 bits (628), Expect = 1e-68
 Identities = 126/242 (52%), Positives = 159/242 (65%), Gaps = 8/242 (3%)
 Frame = -2

Query: 863 SHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIG 684
           S +WP YV+ERI TTY Y+AGSL LTA S VA  R+ A++ L A  G MS+  T+  MI 
Sbjct: 102 SAIWPSYVRERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIA 161

Query: 683 SGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTI 504
           SGM+ R ++Y     AK LAW  H G++GAV AP+CF+ GP+L RAAWYTAG+VGGLS  
Sbjct: 162 SGMLARSIDYESTV-AKHLAWALHCGVLGAVFAPLCFMAGPVLTRAAWYTAGIVGGLSAT 220

Query: 503 AVCAPSGEFLNMRAPLAMGLGAVFAASLAGMFLPPTXXXXXXXXXXXXXXXLIVFGGFLL 324
           A+ APS +FL M  PLAMG G VF A++   FLPP                LI+F  FLL
Sbjct: 221 AITAPSEKFLMMSGPLAMGFGVVFVANIGAFFLPPGSALGASLASIVVYGGLILFSAFLL 280

Query: 323 YDTQSIIKRAEMHPP----YG----FKPYDPINSAISVYLDVLNIFMRIAMILSGAGGNR 168
           YDTQ ++K+AE HP     YG     + +DPIN+ +S+Y+DVLNIFMR+ MI+ G  GNR
Sbjct: 281 YDTQRLVKKAENHPHSSQLYGSDMQIRSFDPINAQMSIYMDVLNIFMRLVMIMGGMNGNR 340

Query: 167 RK 162
           RK
Sbjct: 341 RK 342


>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = -2

Query: 278 YGFKPYDPINSAISVYLDVLNIFMRIAMILSGA 180
           Y F P D I + +S+Y+D+LN+F+RI  I++ A
Sbjct: 242 YRFSPEDYICACVSLYMDILNLFIRILQIVAEA 274


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 313 CVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPI 453
           C+     PP  + PP  L  Y PAP        +PA   A  AP P+
Sbjct: 44  CIPTAAAPPMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPV 90


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 43  IFHILNSF--TNMFGITTFSVC 102
           +FHI N+F   N F +TTFS+C
Sbjct: 289 VFHIFNTFELVNSFSVTTFSIC 310


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +1

Query: 322 YNKNPP-NTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP-RPIASGARMFKNSPDGA 495
           YN  PP  T  P      YNP P+     +  P     N AP +P  S        P G 
Sbjct: 196 YNPQPPPKTGYPTNPRVPYNP-PQPNYTRQ--PTYPEDNRAPYKPTRSPNTPPPRQPSGG 252

Query: 496 HTAIVLRPPTTPAVYQAAR-IRIGPPRKQIGAMTAPIIP 609
           + +    PP++P +Y   R    GP   +    TAP +P
Sbjct: 253 YDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVP 291


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 278 YGFKPYDPINSAISVYLDVLNIFMRIAMI 192
           Y   P D I +A+ ++LD+LNIF+ +  I
Sbjct: 211 YELSPEDYIFAAMEIFLDILNIFLMLLNI 239


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 714  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 821
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 714  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 821
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 510  YNCSVCTIWRVLEHACSTCYGSRSCVCCIS 421
            ++C+V T      H CST  G +  +CC+S
Sbjct: 1913 FSCTVLTNGCPATHYCSTMPGQKKGICCVS 1942


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 714  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 821
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 714  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 821
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical
           protein T23F6.3 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -1

Query: 504 CSVCTIWRVLEHACSTCYGSRSCVCCISGWDVSTTY-*CSWCR 379
           C+VC    V    C+ C     C  C+  W  S+T   C  CR
Sbjct: 210 CTVCFETPVDPQGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCR 252


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
 Frame = +1

Query: 517  PPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVC---------AIHANCLAPNPGVYSIPL 669
            P     V QA  + + PP       T PI+ V          A+ +    P+P   S P+
Sbjct: 2190 PTNQSPVTQAPPVTLPPPSVATAGPTGPILTVVPVSSAPTSGAVSSTTNTPSPTNQS-PV 2248

Query: 670  TTMPEPIIR--PNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVF 828
            T  P  +    P   I+ + P +++   S  V  TATA P ++T + +    V F
Sbjct: 2249 TLPPPSVATAGPTGPILTVVP-VSSAPTSGAVSSTATAAPVITTTKTSSVLSVSF 2302


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -2

Query: 644 FGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAVCAPS-----GE 480
           FG+ Q +    TG+ G   A     GG      A  +AG+ G  S  A  AP+     G 
Sbjct: 49  FGSAQPS-TGSTGLFGNSTATGSMFGGSSAAAPAPASAGIFGN-SGAAAPAPASTSIFGS 106

Query: 479 FLNMRAPLAMGLGAVFAASLAGMF 408
             N  AP  +  GA   ++ AGMF
Sbjct: 107 SANSAAPATVTFGASAPSAGAGMF 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,842,778
Number of Sequences: 27780
Number of extensions: 559314
Number of successful extensions: 1766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)