Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a12
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    27   5.3  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    27   7.0  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    26   9.2  

>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 268 KMVKTNSNKCT---CNVHQQCQPESGPGVHFQESPRVKNICRFT 146
           K VK   N CT   C    QC  ++G G  +  S +  ++C FT
Sbjct: 47  KCVKDYPNSCTTIKCQAGYQCTIKNGKGGCYPVSNKSLDLCVFT 90


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 271 KKMVKTNSNKCTCNVHQQCQP-ESGP 197
           KK   T   +C CN +  C P E+GP
Sbjct: 72  KKRQTTRPGECVCNSNSACPPGEAGP 97


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/32 (25%), Positives = 22/32 (68%)
 Frame = -2

Query: 152 VYYRCVFYLAQRQLS*LNQVFRYRLENIINVC 57
           ++ +C  +L+++  +  +++  Y+LEN++N C
Sbjct: 352 LHQKCANFLSEKSENFNDELTNYQLENLVNNC 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,782,744
Number of Sequences: 27780
Number of extensions: 128456
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)