Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a12
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 191 TLPRVSKSQEHL*VYYRCVFYLAQRQ--LS*LNQVFRYR 81
           TLP+VS +   L  Y+ C+ ++      L+ L  +F +R
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 191 TLPRVSKSQEHL*VYYRCVFYLAQRQ--LS*LNQVFRYR 81
           TLP+VS +   L  Y+ C+ ++      L+ L  +F +R
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 191 TLPRVSKSQEHL*VYYRCVFYLAQRQ--LS*LNQVFRYR 81
           TLP+VS +   L  Y+ C+ ++      L+ L  +F +R
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 191 TLPRVSKSQEHL*VYYRCVFYL 126
           TLP+VS +   L  Y+ C+ ++
Sbjct: 314 TLPQVSDAIPLLGSYFNCIMFM 335


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 290 SSPYISSFLSFFGRPTQILFEVR 358
           S  YIS F+    +  QIL+ +R
Sbjct: 265 SGQYISDFVGSCRKTDQILYFIR 287


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 290 SSPYISSFLSFFGRPTQILFEVR 358
           S  YIS F+    +  QIL+ +R
Sbjct: 303 SGQYISDFVGSCRKTDQILYFIR 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,806
Number of Sequences: 438
Number of extensions: 1494
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)