Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a11
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 35 0.087
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 34 0.15
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 33 0.35
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 32 0.61
12_01_0079 + 644754-645932,645966-646061,646193-647122 31 1.1
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 31 1.1
11_01_0078 + 609005-610183,610217-610312,610444-611373 31 1.1
04_03_0661 - 18468244-18469580,18469610-18469619 31 1.1
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 31 1.4
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 30 1.9
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 30 1.9
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 30 2.5
11_06_0397 + 23110842-23111164,23111714-23111909,23114120-231144... 29 3.3
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 29 3.3
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 29 3.3
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 3.3
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 29 4.3
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 5.7
05_05_0191 + 23127068-23127331,23127514-23127546 29 5.7
02_04_0095 - 19668323-19668496,19668585-19668758 29 5.7
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 7.6
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 28 10.0
08_01_0397 - 3509186-3510291,3510322-3512335 28 10.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 10.0
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 34.7 bits (76), Expect = 0.087
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 465
Q A R + R +QE RE+A E +++ A +R AS K ER+R ER AE +
Sbjct: 567 QRAQRAAVQRAQQEARERAAAEAKEKAARIAAEARERAASEAK--ERERAAAERAAAERV 624
Query: 464 MHRYRE 447
R+
Sbjct: 625 QQEARK 630
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 608 QEKREKARLE-KQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHENVE 432
+EK +ARLE +Q+ + EQR + LE+++ + ER+ E RE + E
Sbjct: 498 EEKERQARLEQEQEMKLMEEKKREQRRLEKERELEQQK-ERERQAMERATKEARERASAE 556
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 556 LQPHPNNVRHLTENGWSANECRTKGEKQRRSCTATGNMRM 437
+Q HPN +RH+ E+G NE RT G+K + T G+ R+
Sbjct: 531 MQVHPNGIRHIREDG-RVNEWRTPGKK---TITKVGSNRL 566
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 32.7 bits (71), Expect = 0.35
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEI 465
+E RQ RK +E+ EK R E++++ QRE +K R+ + +RR+ EE
Sbjct: 496 EERRRQEEERKRREEEEKERREREEEER------RQREKEEKK---RREEEEQRREEEE- 545
Query: 464 MHRYREHENVEQ 429
R RE E EQ
Sbjct: 546 EERRREEEEEEQ 557
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -1
Query: 611 EQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYREHENVE 432
E+E+ E+ R +++K+ E+R+ + ER+ + E R+ E + R E +
Sbjct: 480 EKEREEEERRQREKEEEERRRQEEERKRREEEEKERREREEEERRQREKEEKKRREEEEQ 539
Query: 431 Q 429
+
Sbjct: 540 R 540
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 623 LARKEQEKREKA--RLEKQKQHTIPATTPEQREASYRKWLERKRMQ---NERRKAEEIMH 459
L RK +E+ E + EK+++ ++ E R+ ERKR + ERR+ EE
Sbjct: 464 LERKAEEEEEGGGGKGEKEREEEERRQREKEEEERRRQEEERKRREEEEKERREREEEER 523
Query: 458 RYREHE 441
R RE E
Sbjct: 524 RQREKE 529
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 31.9 bits (69), Expect = 0.61
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKREK--ARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAE 471
Q+ +Q A +EQ++REK A ++KQ++ EQ+ + RK+ + ++ +AE
Sbjct: 358 QQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAE 417
Query: 470 EIMHRYREHENVE 432
+ R RE E V+
Sbjct: 418 KEQKR-REKEAVQ 429
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 620 ARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRY 453
A+KEQ++REK E +KQ E+ + K + + Q +K +M R+
Sbjct: 391 AQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAVQLKKQLAIQKQASMMERF 446
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 614 KEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
K + K E+ RL + ++ + +QRE + ER+R+++E+ +AEE
Sbjct: 213 KAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEERRRLRDEKAEAEE 261
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 623 LARKEQEKREKARLEKQKQHT-IPATTPEQREASYRKWLERKRMQNERRKAEE 468
+ RK + ++EK+K+ + A +RE R+ LE+K ++ ER+KAEE
Sbjct: 87 VGRKRIHEEVLVQIEKEKEAALVEAQHKAERERKEREELEKK-LEEERKKAEE 138
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 614 KEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
K + K E+ RL + ++ + +QRE + ER+R+++E+ +AEE
Sbjct: 213 KAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEERRRLRDEKAEAEE 261
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 617 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
RKE+EK EK R +K+ A ++ EA+ ERKR + E ++A E
Sbjct: 85 RKEEEKAEKQR---RKEAKYLAKKMQEEEAARAAEEERKRKEEEAKRAAE 131
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 620 ARKEQEKREKARLEKQKQHTIPATTPEQREASYRKW--LERKRMQNERRKAEEIMHRYRE 447
A+KE+EK +A K +P E +EA R+ ERK+ + E R +E R ++
Sbjct: 401 AKKEEEKAVEAPKGKVDMKKLPKHVREMQEALARRQEAEERKKREEEERLRKEEEERLKK 460
Query: 446 HE 441
E
Sbjct: 461 EE 462
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKR-EKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
QEA + +E++KR E+ RL K+++ + ++E RK E KR + ER K E+
Sbjct: 429 QEALARRQEAEERKKREEEERLRKEEEERL------KKEEEERKAEEAKRRKKEREK-EK 481
Query: 467 IMHRYRE 447
++ + +E
Sbjct: 482 LLKKKQE 488
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 641 EAFRQWLARKEQE---KREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRK 477
E FRQW A +E+E R++ R + ++H + A Q+ RK E M +R K
Sbjct: 647 EQFRQWKATREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRK-TEEAAMATKRLK 703
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKREK-ARLEKQKQHTIPATTPEQREASYRKWL-ERKRMQNERRKAE 471
++A + + RK++E+RE+ R E+++Q + + EA + WL E++R++ +R E
Sbjct: 490 EQARAREIVRKQEEERERLIREEEERQRLV------EEEARHAAWLAEQERLEAAKRAEE 543
Query: 470 EIMHRYRE 447
+ + R E
Sbjct: 544 QRIAREEE 551
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 608 QEKREKARLEK--QKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 447
+++RE R+EK QKQ ++ E K R++ NER A I Y E
Sbjct: 225 EQRREHERMEKFMQKQSRRAEKQRQKEELRKEKEAARQKAANERATARRIAREYME 280
>11_06_0397 +
23110842-23111164,23111714-23111909,23114120-23114410,
23116292-23116297
Length = 271
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 581 EKQKQHTIPATTPEQREASYRKWLERK 501
+KQK H I T ++ A YR+W+ER+
Sbjct: 180 DKQKNHDIRLKTLLEQFARYREWIERE 206
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 614 KEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIMHRYRE 447
K +RE A+LE + Q PA+ PE + WL+ QN+ ++ E + R ++
Sbjct: 471 KGSYERELAKLEAE-QTDKPASRPEAAKPGLPHWLQLSNDQNKAKEQELKLKRSKD 525
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 614 KEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
+E E+R + +E++K+ E R ++W E+KR++ E K E
Sbjct: 13 EESERRRQKMIEEEKKRLDEEM--ELRRRRVKEWQEQKRLEEEEAKRRE 59
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 623 LARKEQEKREKAR-LEKQKQHTIPATTPEQR---EASYRKWLERKRMQNERRKAEE 468
L RK++ + EK + LEKQKQ Q+ E K LE+++ + E RKA E
Sbjct: 632 LERKKRSQDEKRKELEKQKQEEERKELDRQKQREEERKAKELEKQKQREEERKALE 687
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 614 KEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
KE+E+RE R E++ H ++ SYR+ + R + E+ K +E
Sbjct: 16 KEKERRETHRREEKDHHGSGRRDRDRDRESYREKDKDDRREKEKEKEKE 64
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -1
Query: 641 EAFRQWLARK--EQEKR--EKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNE---R 483
E R+ + R+ E+E+R E+ R E ++ E+ E R ER+R + E R
Sbjct: 201 ERLREGIERRAEEEERRAEEERRAEAERAAAEERARREEEEGRARAEEERRRREEERRRR 260
Query: 482 RKAEEIMHRYREHE 441
RK E++ R E
Sbjct: 261 RKEEKVREEARRRE 274
>05_05_0191 + 23127068-23127331,23127514-23127546
Length = 98
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -1
Query: 617 RKEQEKREKA--RLEKQKQHTIPATTPEQ 537
+ E+EKR++ +LEK + T PATTP Q
Sbjct: 61 KSEEEKRKRVHRKLEKLHRPTSPATTPPQ 89
>02_04_0095 - 19668323-19668496,19668585-19668758
Length = 115
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 623 LARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
LAR+ + R AR + + E+ Y + +ER++++ ERRKA++
Sbjct: 23 LARRMEGGRRVARYFSDGTGRVLSEEERAAESVYIQKMEREKLEKERRKADK 74
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 617 RKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEEIM 462
+KE+ K K+ +K K++ +PA E+ Y + RK + + E+++
Sbjct: 62 QKEESKSRKSTKDKSKKNKVPANA-EEFHKKYTTKVIRKESRTDSSSTEQVI 112
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 644 QEAFRQWLARKEQEKREKARLEKQKQHTIPATT-PEQREASYRKWLERKRMQNERRKAEE 468
Q+ +Q +++Q+++++ +L+ Q QH +P P+Q+ + + + QN+ +K E
Sbjct: 973 QQQVQQQQQQQQQQQQQQQQLQLQ-QHALPVQQQPDQKYSQLPSSGDTRHEQNKPQKLES 1031
Query: 467 IMHRYRE 447
M E
Sbjct: 1032 QMDHQSE 1038
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 608 QEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRKAEE 468
+ +R+K + E+QKQ E R ++W E KR + E ++ E+
Sbjct: 155 ERRRQKKKEEEQKQLD---EEMETRRRRIKEWQEMKRREEETKRREQ 198
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 620 ARKEQEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQ 492
ARK++E+R++ E++ + A QRE + E++RM+
Sbjct: 854 ARKQEERRKREETERKAKLDAIAAKQLQRERELEEKKEKQRME 896
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,385
Number of Sequences: 37544
Number of extensions: 317400
Number of successful extensions: 1040
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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