Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a11
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.20 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.82 

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 9/44 (20%), Positives = 28/44 (63%)
 Frame = -1

Query: 608 QEKREKARLEKQKQHTIPATTPEQREASYRKWLERKRMQNERRK 477
           Q +++  + ++Q QH I A  P+Q++   ++  ++++ Q ++++
Sbjct: 419 QAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 583 WKNK-NNTLSLQPHPNNVRHLTENGWSANECRTKGEKQRRSCTATGNM 443
           WKN   + LSL      V ++    W+ +E      + +R+C+ TG +
Sbjct: 548 WKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRACSTTGGV 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,374
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)