Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a09
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   1.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    23   4.3  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    23   5.6  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    23   5.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    23   7.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    22   9.8  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          22   9.8  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    22   9.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     22   9.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    22   9.8  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 227 KMCASVEGVCWSLY 186
           ++C+S++ +CW LY
Sbjct: 234 RLCSSLKRICWELY 247


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 77  MTFSYENTMICFLNI*KSF*YSKSNQVSSVAC 172
           ++FS  N  + F N    F Y K ++ S + C
Sbjct: 595 LSFSKLNDFVVFFNNYSRFEYEKESKRSDIVC 626



 Score = 22.2 bits (45), Expect = 9.8
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +1

Query: 76  NDIFLREY----NDLFFKHLKIILIFEI*SSVKCCLPLHLIYKLQHTPSTL 216
           N  FL E+    +DL F+ +      EI   + CC   H     QH P  L
Sbjct: 291 NSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 128 IFKCLKNRSLYSRKKMSLLLI 66
           IFK +K   +YS+K   LLLI
Sbjct: 92  IFKNIKEDLMYSKKLQVLLLI 112


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 241 IESKEKCVQVLRGCVG 194
           I  KE C+ V  GC G
Sbjct: 106 IAEKENCIAVSHGCTG 121


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 81  VITSHLDTA*KTCNSFIK 28
           +ITSHLDT  K  + FI+
Sbjct: 266 LITSHLDTLTKGISQFIE 283


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 85   FLREYNDLFFKHLKI 129
            F R+Y  + FKHL I
Sbjct: 1688 FQRKYGSIIFKHLDI 1702


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 193 VCILNVMAGNT*HLIRFRIL 134
           +CI N+++  T  + RFR L
Sbjct: 22  LCIQNILSARTLKICRFRFL 41


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 185 YTNSNTPPQHLHT 223
           YT+S+ PP H+ T
Sbjct: 396 YTSSSVPPSHITT 408


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 195 PTHPLNTCTHFSFDSIA 245
           P+H + +C H+  D +A
Sbjct: 710 PSHHIRSCKHYFLDRLA 726


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 88  LREYNDLFFKHLK-IILIFEI*SSVKCCLPLHLIYKL 195
           LR Y D F +HLK ++      +S +    L L+ KL
Sbjct: 746 LRRYEDSFSRHLKSLVNACNYFASTETAALLSLVMKL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,755
Number of Sequences: 5004
Number of extensions: 17067
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)