Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a06
(860 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 35 0.003
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 31 0.034
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 30 0.079
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 30 0.10
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 28 0.32
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 27 0.73
AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein p... 26 1.3
AY579078-1|AAT81602.1| 425|Anopheles gambiae neuropeptide F rec... 26 1.7
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 26 1.7
AJ439353-9|CAD27931.1| 391|Anopheles gambiae transcription fact... 25 2.2
M93689-1|AAA29368.1| 442|Anopheles gambiae protein ( Anopheles ... 25 3.0
AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha ... 24 5.2
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T... 24 6.8
AF002238-1|AAB97731.1| 327|Anopheles gambiae ribosomal protein ... 24 6.8
EF014219-1|ABJ91581.1| 647|Anopheles gambiae cation proton anti... 23 9.0
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 35.1 bits (77), Expect = 0.003
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 3/203 (1%)
Frame = -1
Query: 752 QELAPIPDLLKATQMRLKDAQQAQAIAEHNAEQLARE-LNCAREKVHVLLHNSLKPPEKP 576
QE+ D LK Q LKDA++ A+ LA E REK + L +
Sbjct: 258 QEIQKAQDRLKNAQKALKDAKKDVVTAKDEKSVLATEHQQLLREKTKL----DLTISDLS 313
Query: 575 PERGGDEKQMALLNQRISQLAENNISLKSEIERLKA--SVIRTEESALANEKRLQEKMHE 402
E GD K Q + +L + E+E+++ +R +E + E L+E+ +
Sbjct: 314 DEVQGDNKSKERAEQELERLKITIAEKEKELEQVRPRYEAMRRKEEECSRELNLKEQKRK 373
Query: 401 CAQLGGELDRTRDEASRALQRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKEREE 222
EL + S+ E+ + ++ L++ +++ +++ +K+ +
Sbjct: 374 ------ELYAKQGRGSQ-FSSKEERDKWIQGELKSLNKQIKDKISHQNKLQDDLKKDIAK 426
Query: 221 LKNRLHWQMKRLTENFEQAQLRI 153
+ L +++ TE+FEQ +++I
Sbjct: 427 -QGELEKKIQEHTESFEQLRVQI 448
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 31.5 bits (68), Expect = 0.034
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Frame = -1
Query: 572 ERGGDEKQMALLNQRISQLAENNISLKSEIERLKASVIRTEESALANEKRLQEKMHECAQ 393
+RG E + L +R ++L E L+ ++ + + + ++ KR ++K C +
Sbjct: 634 QRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKV--------KRQEQK---CKE 682
Query: 392 LGGELDRTRDEASRALQRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKER--EEL 219
L L +E + + E + + VA LER AASR ++ R EE
Sbjct: 683 LTARLVNVDEEKVKFERSCRTIIEQLLDQQRRKVAALERYAAASREHDLLEQRIRLFEER 742
Query: 218 KNRLHWQMKRLTENFEQAQLRILGLQTQVQSLRRTAS 108
N + L + ++ A+ + ++ ++ ++ +S
Sbjct: 743 NNDREANFRLLEDAYQSAKKTLANVEKKLAEVKAKSS 779
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 30.3 bits (65), Expect = 0.079
Identities = 36/179 (20%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Frame = -1
Query: 764 QEKLQELAPIPDLLKATQMRLKDAQ-QAQAIAEHNAE---QLARELNCAREKVHVLLHNS 597
+++L EL +P K + +++++ + +++ E +L L +++ VLL
Sbjct: 410 EKRLLELQDVP---KKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEK 466
Query: 596 LKPPEKPPE--RGGDEKQMAL--LNQRISQLAENNISLKSEIERLKASVIRTEESALANE 429
K + E R DE + AL + + ++ + ++E L+ S TE+
Sbjct: 467 EKLQTELIELKRAVDESKSALSIAESELKICQHDEVTERRKLESLRYSYEETEKDLEEKR 526
Query: 428 KRLQEKMHECAQLGGELDRTRDEASRALQRAHEQTETVRKCLQTTVAELERQLAASRAQ 252
RLQ EL+ + + E T+T+R +Q + E + ++R+Q
Sbjct: 527 ARLQTLEEALPVTRTELETAKQKLQENANEERELTQTLR-AVQGKLQESMAAMQSTRSQ 584
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 29.9 bits (64), Expect = 0.10
Identities = 26/120 (21%), Positives = 53/120 (44%)
Frame = -1
Query: 548 MALLNQRISQLAENNISLKSEIERLKASVIRTEESALANEKRLQEKMHECAQLGGELDRT 369
M +++R+ E+ + E ER + + E+A+ EK +E + + E ++
Sbjct: 434 MQSIHERMKLEEEHRAARLREEERAREA----REAAIEREKE-RELREQREREQREKEQR 488
Query: 368 RDEASRALQRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKEREELKNRLHWQMKR 189
E +R +Q E ++ + E ER+ A R + E+ERE + + + + R
Sbjct: 489 EKEQREKEERERQQREKEQREREQREKEREREAARERERERERERERERMMHMMPHSLPR 548
Score = 26.2 bits (55), Expect = 1.3
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = -1
Query: 713 QMRLKDAQQAQAIAEHNAEQLARELNCAREKVHVLLHNSLKPPEKPPERGGDEKQMALLN 534
+M+L++ +A + E + ARE REK L + ER EK+
Sbjct: 440 RMKLEEEHRAARLREEERAREAREAAIEREKEREL--------REQREREQREKEQREKE 491
Query: 533 QRISQLAENNISLKSEIERLKASVIRTEESALANEK-RLQEKMHE 402
QR + E K + ER + R E+A E+ R +E+ E
Sbjct: 492 QREKEERERQQREKEQREREQREKEREREAARERERERERERERE 536
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 28.3 bits (60), Expect = 0.32
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = -1
Query: 518 LAENNISLKSEIERLKASVIRTEESALANEK---RLQEKMHECAQLGGELDRTRDEASRA 348
+A S E+E LKA++ + EE L ++ RL E++ QL L ++EA R
Sbjct: 82 VATKAASTTPELELLKATIQQLEEQNLEMKEQNFRLAEQITRMCQL---LQEEKEEAKRR 138
Query: 347 LQRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKERE 225
++ Q E + Q L LAA A + R+
Sbjct: 139 EEKLKAQMEKLAAAHQRDRNLLNSLLAAKVAGGQPSASSRQ 179
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 27.1 bits (57), Expect = 0.73
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 344 QRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKEREELKNRL---HWQMKRLTENF 174
Q A E E + + ELE+QLA + +T ER +K+ + ++K L ++
Sbjct: 279 QEAKELQERIDTEGGGVLGELEQQLAVESKKEATVAAERNTMKDSIGQEQRKLKNLQKSI 338
Query: 173 EQAQLRILGLQTQVQ 129
+ + G + ++Q
Sbjct: 339 RDDEQALAGKEVEMQ 353
>AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein
protein.
Length = 468
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 296 TVAELERQLAASRAQVSTAEKEREELKNRLHWQMKRLTENFEQAQ 162
TV +L+R LAA + + +EL+ ++ MK+ E E+A+
Sbjct: 48 TVEDLQRSLAAEKEEKMKLTVLLQELQAQISIMMKKSRETKEEAR 92
>AY579078-1|AAT81602.1| 425|Anopheles gambiae neuropeptide F
receptor protein.
Length = 425
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 366 GRGLAGAAESPRANGNCAEVPPNHGSRAGTTAG 268
G G G + RANG A V +R T G
Sbjct: 353 GHGSGGHSNGSRANGGAATVGRTRAARTATDGG 385
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 25.8 bits (54), Expect = 1.7
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 4/215 (1%)
Frame = -1
Query: 722 KATQMRLKDAQQAQAIAEHNAEQLARELNCAREKV--HVLLHNSLKPPEKPPERGGDEKQ 549
K M +A+ A+ A + EQ AR KV L ++ E+ R
Sbjct: 826 KKDAMGAVEAEIARIQASIDKEQQARHDLQTNHKVKQQALKRSTESMEERKRTRVALSAA 885
Query: 548 MALLNQRISQLAENNISLKS--EIERLKASVIRTEESALANEKRLQEKMHECAQLGGELD 375
+ Q S+ E + +E+LK I T E + Q+K+ + + +
Sbjct: 886 LEQARQEASEKGERPDESEQIPSVEQLKGK-IHTTEKRIRLVSATQDKLEDVVEELEGKN 944
Query: 374 RTRDEASRALQRAHEQTETVRKCLQTTVAELERQLAASRAQVSTAEKEREELKNRLHWQM 195
R RDE R + T+ +R ++ + L + +V +++N L
Sbjct: 945 RERDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALRVKHKFTNIMQIRNYL--GK 1002
Query: 194 KRLTENFEQAQLRILGLQTQVQSLRRTASSTGDGD 90
R+ + + L ++ VQ+ T S G+
Sbjct: 1003 LRVNQEECRLSLSVVPRDANVQNAVSTTKSLSGGE 1037
>AJ439353-9|CAD27931.1| 391|Anopheles gambiae transcription factor
protein.
Length = 391
Score = 25.4 bits (53), Expect = 2.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 512 ENNISLKSEIERLKASVIRTEESALANEKRLQE 414
++ + + E ER + VIRTEE E+ L+E
Sbjct: 145 QSRLKQRFEAERKRTRVIRTEEYIPTQEELLEE 177
>M93689-1|AAA29368.1| 442|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 442
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 499 LMLFSASC-DILWLRSAIC 552
L+LF C DI+WLRS C
Sbjct: 6 LLLFRQFCRDIVWLRSCSC 24
>AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha 1
chain precursor protein.
Length = 801
Score = 24.2 bits (50), Expect = 5.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 387 GRVGPHQGRGLAGAAESPRANGNCAEVPPNHGSRAGTTAGGLQG 256
G VG +G G + G CA +PPN A GLQG
Sbjct: 738 GNVGYSGDKGDKGYSGLKGEPGRCASIPPNL-EEAIRGPQGLQG 780
>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
phosphatase protein.
Length = 1977
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -3
Query: 306 PPNHGSRAGTTAGGLQG--TSQHRREGTGRAEKPIALANEASDGEL 175
PPN G A T AGG Q RR + ++ + + ++G L
Sbjct: 1304 PPNDGGGAATAAGGGYPPLMPQRRRRNSSNSKHDLMSPCKPTNGSL 1349
>AF002238-1|AAB97731.1| 327|Anopheles gambiae ribosomal protein L5
protein.
Length = 327
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 331 SKRKLCGSASKPR*QSWNDSWRPPGHKSAPPRRNGKS 221
S RK+ S PR +S R P +S P RR +S
Sbjct: 246 SIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRS 282
>EF014219-1|ABJ91581.1| 647|Anopheles gambiae cation proton
antiporter protein.
Length = 647
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 821 CPYPSCPS 844
CPYP CPS
Sbjct: 138 CPYPLCPS 145
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,787
Number of Sequences: 2352
Number of extensions: 16177
Number of successful extensions: 63
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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