Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a06
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.39 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.68 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 592 SPRKNLRNAVGTRNKWHFLTREYHNSRRITSA 497
           S  KNL N +   +KW +L  ++ N  R  +A
Sbjct: 27  SSGKNLTNTLNVIHKWKYLDYDFDNDERRQAA 58


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 233 EREELKNRLHWQMKRLTENFEQAQLRILG 147
           E  ++ N L  +  +L+E FEQ +++ILG
Sbjct: 293 ELVKILNELFARFDQLSERFEQLRIKILG 321


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +2

Query: 251 LVPWRPPAVVPALLPWFGGTSAQFPFARGLSAAPARPRPWCGPTLPQAGHIRASSL 418
           LV W+     PA    F       PF       P +P PW       AG++  S+L
Sbjct: 201 LVGWKDKRSHPAYNMTFAQNG---PFNTTTIFVPVKPCPWICELTNDAGYVVYSAL 253


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 431 EKRLQEKMHECAQLGGELDRTRDEASRALQRAH 333
           EK   EK+     LG ++ RT  EAS     AH
Sbjct: 130 EKMSDEKISTLYALGAKIIRTPTEASWHSPEAH 162


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 626 EKVHVLLHNSLKPPEKPP 573
           +K HVL HN L  P   P
Sbjct: 642 DKEHVLAHNDLMSPLDEP 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,419
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)