Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a04
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 29 1.2
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 2.1
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p... 27 3.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.6
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.4
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 26 6.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 6.4
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 8.4
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 758 PDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQ 636
PDP ++ N+P+ R AT + S+ +++ E + Q
Sbjct: 163 PDPSSKVSNIPEENRDATSAISEGKETESVSLEETGVLKNQ 203
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 746 AEKENVPDFGRQATPSSSKQARRK 675
A+++ +PD QATP+ SK+ R++
Sbjct: 344 ADEKQLPDASSQATPADSKEPRKE 367
>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 109
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 731 VPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAM-LHEVGLADAQEHPAEL 555
+PD +Q + RR+ I TEN ++P+ E + + E G+ D HP L
Sbjct: 22 IPDNLQQFDAILKRLERRRFIPTEN-----QKPRVYETELLVLRFREFGVKDNHNHPINL 76
Query: 554 HA 549
H+
Sbjct: 77 HS 78
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -1
Query: 782 RTEITMALPDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKD 627
+T +L P +++ ++ GR+ TPS ++A R+ + +YN Q +D
Sbjct: 1485 KTNSGSSLSTPLSQESSLARSGRKNTPSYKQKALRRYCMEIFERLYNLQSED 1536
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -1
Query: 713 QATPSSSKQAR--RKTILTENISIYNEQPKDSER--SVTAMLHEVGLADAQEHPAELHAA 546
+++P+S A RK+ +T + YN P S T + A Q HP H +
Sbjct: 222 ESSPASVNAAAIVRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLS 281
Query: 545 TAQRPPRPASGSSETP 498
+ PP+ + S +P
Sbjct: 282 QSNVPPQLSHSSVPSP 297
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = -1
Query: 632 KDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPR---------PASGSSETPLGSLDR 480
+ ERS+ ++ +++ ++ ++P T Q+PPR PA E P + DR
Sbjct: 323 ESDERSLPSVSNDLKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVEVPAPTFDR 382
Query: 479 TKVSLGDSEQTTD 441
VS + + +
Sbjct: 383 RNVSRNSNNNSPE 395
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 531 SETSQRELRDTSRESGPN*SVARGL*-TDNGFEKIYTR 421
+E +RE+ + +RE+ + + +DNGFEKI+T+
Sbjct: 222 NEMERREIAELARETTELNELRSSIGQSDNGFEKIFTK 259
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 800 RQSQQLRTEITMALPD-PQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDS 624
R Q L+ + + +PD EK+ + + G + ++ K + T + +P+D+
Sbjct: 697 RIDQVLQRVMDLRVPDLSDKEKQFIKEIGNYKEKVTGERGIEKRVETLKTLLQRTKPRDA 756
Query: 623 ERSVTAMLHEVGLADAQE 570
+ ++ A ++ LA ++
Sbjct: 757 QTTLVASSSDMRLAAIEQ 774
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 83 MNCFNRTFNVIQYSVST*QLNKIVYNI 163
++C RT NVIQY +S L I +N+
Sbjct: 430 LDCLGRT-NVIQYQISRLVLKDIFFNL 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,464
Number of Sequences: 5004
Number of extensions: 67930
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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