Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a04
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1086 - 30279976-30280013,30280098-30280159,30280284-302803... 32 0.54
07_03_0929 - 22702297-22703010,22703095-22703432,22703668-22703893 31 1.7
04_01_0614 + 8049199-8049579 30 2.2
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 30 2.9
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 29 5.1
10_06_0162 - 11348250-11349531,11349571-11349671 29 5.1
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 29 5.1
12_02_0316 + 17432346-17432520,17432604-17433211 29 6.7
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 29 6.7
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 6.7
11_03_0202 - 11596782-11596936,11597597-11597894 28 8.8
05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664 28 8.8
04_04_0894 + 29160537-29160628,29161368-29162198,29162356-291626... 28 8.8
01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391 28 8.8
>03_05_1086 -
30279976-30280013,30280098-30280159,30280284-30280377,
30280491-30280756,30281841-30282091
Length = 236
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 731 VPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELH 552
+P G A +++K A+R E I + + P A E A+ + PAE
Sbjct: 16 LPGGGGGAAEAAAKAAKRG--FEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAA 73
Query: 551 AATAQRPPRP 522
AA A++PP P
Sbjct: 74 AADAEKPPAP 83
>07_03_0929 - 22702297-22703010,22703095-22703432,22703668-22703893
Length = 425
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -1
Query: 698 SSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRPA 519
SS R K + + + Y +P ++ ++HE L D A + AT +RPP P
Sbjct: 121 SSGSTREKVGVKKALVFYRGKPPKGVKT-NWIMHEYRLTDTSSSAAAV--ATTRRPPPPI 177
Query: 518 SGSSE 504
+G S+
Sbjct: 178 TGGSK 182
>04_01_0614 + 8049199-8049579
Length = 126
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 710 ATPSSSKQARRKTILTENISIYNEQPKDSERSV---TAMLHEVGLADAQEHPAELHAATA 540
AT S T+++ + S+ + + +D + TA LA A++ A AA A
Sbjct: 38 ATLSGPTAPLESTVISTS-SLRDRESRDKNNAAATATAAASTTRLASARQRTAHCPAAAA 96
Query: 539 QRPPRPASGSSETPLG 492
PPRP + + P G
Sbjct: 97 CCPPRPRVANRQPPFG 112
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 29.9 bits (64), Expect = 2.9
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Frame = -1
Query: 575 QEHP---AELHAATAQRPPRPASGSSET---PLGSLDRTKVSLGDSEQTTDSKRFIRDQW 414
Q HP A HA T PP PA+ +S T G+ D + + L +E D D
Sbjct: 128 QMHPLTAAAKHAITIPPPPPPAAAASYTSSPSSGTSDPSVLDLSSAEIDDDGD---GDDD 184
Query: 413 GTEGTMIKILKHIKAGLLPINVTSLVLKGPLVP 315
E IK K + G P + V KGP P
Sbjct: 185 RAEQQEIKNSKELVMGRAPCCDKASVKKGPWSP 217
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -1
Query: 866 RGPRM*SGESPKRQRSIGYVSFRQSQQLRTEITMALPDPQAEKENVPDFGRQATPSSS 693
RG G P +++ +GYV F + + ALP + E + G ++ P S+
Sbjct: 139 RGRGRGRGRPPTKRKEVGYVQFEDESSMFADQGEALPGEETVPETI--HGTESVPPST 194
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 29.1 bits (62), Expect = 5.1
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -1
Query: 758 PDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLAD 579
P P A + PD G + + SSSK A +I+ + + S+ T +L + D
Sbjct: 192 PPPHAAADGEPDVGHRPSSSSSKCA-----AAVDINQNGDATRPSKARATQLL-TAAIFD 245
Query: 578 AQEHPAELHA---ATAQRP-PRPASGSSETPLGSLD 483
Q + +LH + A RP +P + +T +LD
Sbjct: 246 LQINHVDLHVNKNSDAVRPKKKPRAADPQTSKSALD 281
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 845 GESPKRQRSIGYVSFRQSQQLRTEITMALPDPQAEKENV 729
GES RSIG +F+Q++ L E M + DP ++
Sbjct: 334 GESVTISRSIGDFAFKQNKDLNREEQMLICDPDIHTHDI 372
>12_02_0316 + 17432346-17432520,17432604-17433211
Length = 260
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 668 LTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRPASG 513
+ ++ Y +P +++ M HE LA A P AATA P RPA G
Sbjct: 118 MKRSLVFYRGKPPTGKKTDWVM-HEYRLAGAGLAPCR-RAATADHPARPAEG 167
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 228 YIFYNLDEAMLFQFEQRRETTGSNY--FLVSGNERPFEYETRHVNREESGFYML*NFYHS 401
Y++ + A+ F +++ E +NY V ++RP Y HVNR+ S N +
Sbjct: 339 YLYTLVLNALEFLSQKKNERFNANYDHTRVLKDKRPILYLVSHVNRDSSNGCSYHNLTYC 398
Query: 402 SFS-TPLVSYKSFRIRCL 452
S T S+ + C+
Sbjct: 399 SIDPTTCCSFSNLAANCV 416
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 533 PPRPASGSSETPLGSLDRTKVSLGDSEQTTDSKRFIRDQWGTEGTMIKILKHIKAG 366
P +PA ++ + DR+K+ LG + + R R +G + +KI+ H G
Sbjct: 19 PKKPARSAAIVETWAADRSKLLLGPKIASGSNSRIHRGMYGEQPVAVKIM-HAPVG 73
>11_03_0202 - 11596782-11596936,11597597-11597894
Length = 150
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/78 (24%), Positives = 27/78 (34%)
Frame = -1
Query: 734 NVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAEL 555
NVP + R + E+IS+Y + D E + + + H L
Sbjct: 25 NVPPIWIETPEEEEDPEERVFEMQEHISMYADDQGDDEDPYSCSAPNTAASTSTPHAEFL 84
Query: 554 HAATAQRPPRPASGSSET 501
H A PA GS T
Sbjct: 85 HFAPTSLFTNPAEGSEFT 102
>05_04_0420 + 21106562-21106657,21106851-21107056,21107175-21107664
Length = 263
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 566 PAELHAATAQRPPRPASGSSETPL 495
P E A A+RPP PA G TP+
Sbjct: 154 PDEPAAPAARRPPGPAGGDEPTPI 177
>04_04_0894 +
29160537-29160628,29161368-29162198,29162356-29162615,
29163064-29163164,29163261-29163353,29163926-29164033,
29165074-29165301,29165733-29165837
Length = 605
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 368 GLLPINVTSLVLKGPLVPGYKKIIAARCFASLLKLKQHGFIKIIKDVNTLEVC 210
G LP+ TS++ PL PGY ++ C S++ ++ N +E+C
Sbjct: 25 GALPLVRTSIL---PLHPGYLELCIQDCTMSMIAATLRRSSRVTGSQNIMEIC 74
>01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391
Length = 122
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = -1
Query: 845 GESPKRQRSIGY--VSFRQSQQLRTEITM-ALPDPQAEKENVPDFGRQATPSSSKQARRK 675
GE P R IG+ V SQ T T + P+P + N G TPS S
Sbjct: 44 GEHPYRGEIIGFPDVQANSSQPASTPSTAPSTPNPATPQTNALATGTSGTPSGSAAQSSG 103
Query: 674 TILT 663
TI T
Sbjct: 104 TINT 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,650
Number of Sequences: 37544
Number of extensions: 410497
Number of successful extensions: 1339
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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