Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a04
         (902 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   3.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   7.3  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -1

Query: 758 PDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSE 621
           P   AEKE +       +  S K    +  LT N+S+     +D +
Sbjct: 776 PKASAEKEQIAQIAASLSEISVKMKALEMKLTGNVSVMRSDDEDDD 821


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 563 AELHAATAQRPPRPASGSS 507
           ++LH+A A+ PPR + G S
Sbjct: 768 SDLHSAAARTPPRQSIGYS 786



 Score = 23.8 bits (49), Expect = 7.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 560  ELHAATAQRPPRPASGSSETPLGSLDRTKVSLGDS 456
            E  A+T++  P PA+ S+ TP  S+ R   S  DS
Sbjct: 1304 ECSASTSE--PAPAAPSNSTPSRSVARIVTSFTDS 1336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,841
Number of Sequences: 2352
Number of extensions: 16379
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97574436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)