Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte11a04
(902 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130453-1|AAI30454.1| 1726|Homo sapiens ANKRD26 protein protein. 31 7.6
BC110646-1|AAI10647.1| 165|Homo sapiens ANKRD26 protein protein. 31 7.6
BC022782-1|AAH22782.1| 780|Homo sapiens bromo adjacent homology... 31 7.6
AL162272-4|CAC19649.1| 1710|Homo sapiens novel protein protein. 31 7.6
AL162272-3|CAI12218.1| 212|Homo sapiens novel protein protein. 31 7.6
AB028997-1|BAA83026.2| 1715|Homo sapiens KIAA1074 protein protein. 31 7.6
AB023162-1|BAA76789.2| 797|Homo sapiens KIAA0945 protein protein. 31 7.6
X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140 pro... 30 10.0
BC040361-1|AAH40361.1| 1158|Homo sapiens nuclear receptor intera... 30 10.0
AL163207-1|CAB90396.1| 1158|Homo sapiens nuclear factor protein. 30 10.0
AF248484-1|AAF62185.1| 1158|Homo sapiens nuclear factor RIP140 p... 30 10.0
AF127577-1|AAF35255.1| 1158|Homo sapiens nuclear factor RIP140 p... 30 10.0
>BC130453-1|AAI30454.1| 1726|Homo sapiens ANKRD26 protein protein.
Length = 1726
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 701 SSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRP 522
++S RK I EN+ I P+ S S+ L ++ + EL A A+
Sbjct: 1632 NNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELE--- 1688
Query: 521 ASGSSETPLGSLDRTKVS 468
SGS +PLGS D + ++
Sbjct: 1689 -SGSIASPLGSTDESNLN 1705
>BC110646-1|AAI10647.1| 165|Homo sapiens ANKRD26 protein protein.
Length = 165
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 701 SSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRP 522
++S RK I EN+ I P+ S S+ L ++ + EL A A+
Sbjct: 71 NNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELE--- 127
Query: 521 ASGSSETPLGSLDRTKVS 468
SGS +PLGS D + ++
Sbjct: 128 -SGSIASPLGSTDESNLN 144
>BC022782-1|AAH22782.1| 780|Homo sapiens bromo adjacent homology
domain containing 1 protein.
Length = 780
Score = 30.7 bits (66), Expect = 7.6
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 872 PVRGPRM*SGESPKRQRSIGYVSFRQSQQLRTEITMALPDPQAEKENVPDFGRQATPSSS 693
P GPR +PKR S+ +F + Q R E+ + LP AE + GR P +
Sbjct: 189 PDEGPRRDGDPAPKRLASLNAAAFLKLSQER-ELPLRLPRAHAEVD-----GRSTEPPAP 242
Query: 692 KQARRK 675
K R K
Sbjct: 243 KAPRPK 248
>AL162272-4|CAC19649.1| 1710|Homo sapiens novel protein protein.
Length = 1710
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 701 SSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRP 522
++S RK I EN+ I P+ S S+ L ++ + EL A A+
Sbjct: 1616 NNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELE--- 1672
Query: 521 ASGSSETPLGSLDRTKVS 468
SGS +PLGS D + ++
Sbjct: 1673 -SGSIASPLGSTDESNLN 1689
>AL162272-3|CAI12218.1| 212|Homo sapiens novel protein protein.
Length = 212
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 701 SSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRP 522
++S RK I EN+ I P+ S S+ L ++ + EL A A+
Sbjct: 103 NNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELE--- 159
Query: 521 ASGSSETPLGSLDRTKVS 468
SGS +PLGS D + ++
Sbjct: 160 -SGSIASPLGSTDESNLN 176
>AB028997-1|BAA83026.2| 1715|Homo sapiens KIAA1074 protein protein.
Length = 1715
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 701 SSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRP 522
++S RK I EN+ I P+ S S+ L ++ + EL A A+
Sbjct: 1621 NNSLDLNRKLIPRENLVISTSNPRASNNSMENYLSKMQQELEKNITRELKEAAAELE--- 1677
Query: 521 ASGSSETPLGSLDRTKVS 468
SGS +PLGS D + ++
Sbjct: 1678 -SGSIASPLGSTDESNLN 1694
>AB023162-1|BAA76789.2| 797|Homo sapiens KIAA0945 protein protein.
Length = 797
Score = 30.7 bits (66), Expect = 7.6
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 872 PVRGPRM*SGESPKRQRSIGYVSFRQSQQLRTEITMALPDPQAEKENVPDFGRQATPSSS 693
P GPR +PKR S+ +F + Q R E+ + LP AE + GR P +
Sbjct: 207 PDEGPRRDGDPAPKRLASLNAAAFLKLSQER-ELPLRLPRAHAEVD-----GRSTEPPAP 260
Query: 692 KQARRK 675
K R K
Sbjct: 261 KAPRPK 266
>X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 30.3 bits (65), Expect = 10.0
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Frame = -1
Query: 713 QATPSSSKQARRK---TILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
QA SSSK K T+ + I PK++ L + A + LH
Sbjct: 328 QARTSSSKLMASKSSATVFQNPMGIIPSSPKNA--GYKNSLERNNIKQAANNSLLLHLLK 385
Query: 542 AQRPPRPASGSSETPLGSL-DRTKVSLGDSEQTTDSKRFIRDQWGTEGT 399
+Q P+P +G S + GS+ + + E + ++ F D G E +
Sbjct: 386 SQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESS 434
>BC040361-1|AAH40361.1| 1158|Homo sapiens nuclear receptor
interacting protein 1 protein.
Length = 1158
Score = 30.3 bits (65), Expect = 10.0
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Frame = -1
Query: 713 QATPSSSKQARRK---TILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
QA SSSK K T+ + I PK++ L + A + LH
Sbjct: 328 QARTSSSKLMASKSSATVFQNPMGIIPSSPKNA--GYKNSLERNNIKQAANNSLLLHLLK 385
Query: 542 AQRPPRPASGSSETPLGSL-DRTKVSLGDSEQTTDSKRFIRDQWGTEGT 399
+Q P+P +G S + GS+ + + E + ++ F D G E +
Sbjct: 386 SQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESS 434
>AL163207-1|CAB90396.1| 1158|Homo sapiens nuclear factor protein.
Length = 1158
Score = 30.3 bits (65), Expect = 10.0
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Frame = -1
Query: 713 QATPSSSKQARRK---TILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
QA SSSK K T+ + I PK++ L + A + LH
Sbjct: 328 QARTSSSKLMASKSSATVFQNPMGIIPSSPKNA--GYKNSLERNNIKQAANNSLLLHLLK 385
Query: 542 AQRPPRPASGSSETPLGSL-DRTKVSLGDSEQTTDSKRFIRDQWGTEGT 399
+Q P+P +G S + GS+ + + E + ++ F D G E +
Sbjct: 386 SQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESS 434
>AF248484-1|AAF62185.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 30.3 bits (65), Expect = 10.0
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Frame = -1
Query: 713 QATPSSSKQARRK---TILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
QA SSSK K T+ + I PK++ L + A + LH
Sbjct: 328 QARTSSSKLMASKSSATVFQNPMGIIPSSPKNA--GYKNSLERNNIKQAANNSLLLHLLK 385
Query: 542 AQRPPRPASGSSETPLGSL-DRTKVSLGDSEQTTDSKRFIRDQWGTEGT 399
+Q P+P +G S + GS+ + + E + ++ F D G E +
Sbjct: 386 SQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESS 434
>AF127577-1|AAF35255.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 30.3 bits (65), Expect = 10.0
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Frame = -1
Query: 713 QATPSSSKQARRK---TILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
QA SSSK K T+ + I PK++ L + A + LH
Sbjct: 328 QARTSSSKLMASKSSATVFQNPMGIIPSSPKNA--GYKNSLERNNIKQAANNSLLLHLLK 385
Query: 542 AQRPPRPASGSSETPLGSL-DRTKVSLGDSEQTTDSKRFIRDQWGTEGT 399
+Q P+P +G S + GS+ + + E + ++ F D G E +
Sbjct: 386 SQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDNNPSFTDDSSGDESS 434
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,217,395
Number of Sequences: 237096
Number of extensions: 2221594
Number of successful extensions: 5970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5970
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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