Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a04
         (902 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022129-1|AAY51524.1|  294|Drosophila melanogaster IP08853p pro...    31   2.2  
AE014296-1672|AAF50256.3| 2351|Drosophila melanogaster CG3654-PD...    30   3.8  
BT023792-1|AAZ41801.1|  475|Drosophila melanogaster GH11086p pro...    29   8.7  
AE014296-2276|AAF49819.1|  475|Drosophila melanogaster CG10713-P...    29   8.7  

>BT022129-1|AAY51524.1|  294|Drosophila melanogaster IP08853p
           protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 578 AQEHPAELHAATAQRPPRPASGSS-ETPLGSLDRTKVSLGDSEQTTDSKRFIRDQW 414
           +QE   E+   + +  P+ AS SS +TPL +L +      D EQ + SKR    +W
Sbjct: 191 SQEDRMEVPKKSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRW 246


>AE014296-1672|AAF50256.3| 2351|Drosophila melanogaster CG3654-PD
           protein.
          Length = 2351

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = -1

Query: 755 DPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQ--PKDSERSVTAML--HEVG 588
           + + EK  VP+   +  PS  K+ +      E+     E   P  S++  T      +  
Sbjct: 541 EKEKEKHPVPESKVEEPPSGGKRGKAGKKKAEDAPADEEDLAPPSSKKVATNARGSRKSA 600

Query: 587 LADAQEHPAELHAATAQRPPRPASGSSETPLGSLDRTKVSLGDSEQ 450
            + A E  AEL    +QRP R    ++   +G +   K+ L D E+
Sbjct: 601 KSKASEDSAELEPQRSQRPSRKTKEAAAIYMGIIGH-KLQLADDEE 645


>BT023792-1|AAZ41801.1|  475|Drosophila melanogaster GH11086p
           protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 634 GCSL*ILMF-SVKIVFLRACLLEDGVACRPKSGTFSFSACGSGRAIV 771
           G  L +L+F +    FL ACL+     CR   G FS S+  +GRA V
Sbjct: 348 GTGLEVLIFCTFSAFFLAACLIS---LCRIPKGLFSSSSGSNGRAAV 391


>AE014296-2276|AAF49819.1|  475|Drosophila melanogaster CG10713-PA
           protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 634 GCSL*ILMF-SVKIVFLRACLLEDGVACRPKSGTFSFSACGSGRAIV 771
           G  L +L+F +    FL ACL+     CR   G FS S+  +GRA V
Sbjct: 348 GTGLEVLIFCTFSAFFLAACLIS---LCRIPKGLFSSSSGSNGRAAV 391


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,695,157
Number of Sequences: 53049
Number of extensions: 720851
Number of successful extensions: 2182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)