Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a04
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-2|AAF59555.1|  304|Caenorhabditis elegans Hypothetical ...    32   0.65 
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z27081-1|CAA81606.1|  203|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.      29   4.5  
AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AC024812-2|AAF59555.1|  304|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.3 protein.
          Length = 304

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -1

Query: 608 AMLHEVGLADAQEHPAELHAATAQRPPRPASGSSETPLGSLDRTKVSLGDSEQTTDSKRF 429
           A L   G+A       + HAA  Q+ P+ A    ETP     + + + G  EQ    + F
Sbjct: 57  ADLLRTGIAAEIRGAQQQHAAPQQQQPQGAPQEPETPQAEQPQPRAAAGGREQQHTLEEF 116

Query: 428 IRDQW 414
           IR+ +
Sbjct: 117 IRNMF 121


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 292  AAIIFLYPGTSGPLSTRLVTL----IGRSPAFICFR-IFIIVPSVPHWSRINLFESVVCS 456
            A I+   PG++ PL+T + T+     G SP   C R + + +PS  +   +++  + + S
Sbjct: 2178 ACIVVTPPGSTIPLTTTMATIPTTSAGSSPNTNCARNVMLTIPSGYNAGYLSM--NTISS 2235

Query: 457  ESPSDTLVRSRLPRGVSE 510
            E+    ++    P G+SE
Sbjct: 2236 ETSLQVVMSCEAPTGISE 2253


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 292  AAIIFLYPGTSGPLSTRLVTL----IGRSPAFICFR-IFIIVPSVPHWSRINLFESVVCS 456
            A I+   PG++ PL+T + T+     G SP   C R + + +PS  +   +++  + + S
Sbjct: 2178 ACIVVTPPGSTIPLTTTMATIPTTSAGSSPNTNCARNVMLTIPSGYNAGYLSM--NTISS 2235

Query: 457  ESPSDTLVRSRLPRGVSE 510
            E+    ++    P G+SE
Sbjct: 2236 ETSLQVVMSCEAPTGISE 2253


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 292  AAIIFLYPGTSGPLSTRLVTL----IGRSPAFICFR-IFIIVPSVPHWSRINLFESVVCS 456
            A I+   PG++ PL+T + T+     G SP   C R + + +PS  +   +++  + + S
Sbjct: 2178 ACIVVTPPGSTIPLTTTMATIPTTSAGSSPNTNCARNVMLTIPSGYNAGYLSM--NTISS 2235

Query: 457  ESPSDTLVRSRLPRGVSE 510
            E+    ++    P G+SE
Sbjct: 2236 ETSLQVVMSCEAPTGISE 2253


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 292  AAIIFLYPGTSGPLSTRLVTL----IGRSPAFICFR-IFIIVPSVPHWSRINLFESVVCS 456
            A I+   PG++ PL+T + T+     G SP   C R + + +PS  +   +++  + + S
Sbjct: 2178 ACIVVTPPGSTIPLTTTMATIPTTSAGSSPNTNCARNVMLTIPSGYNAGYLSM--NTISS 2235

Query: 457  ESPSDTLVRSRLPRGVSE 510
            E+    ++    P G+SE
Sbjct: 2236 ETSLQVVMSCEAPTGISE 2253


>Z27081-1|CAA81606.1|  203|Caenorhabditis elegans Hypothetical
           protein M01A8.1 protein.
          Length = 203

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/118 (24%), Positives = 48/118 (40%)
 Frame = -1

Query: 800 RQSQQLRTEITMALPDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSE 621
           R + Q  T++     DP+A + +  +FG    P   +Q  ++   T ++    E P    
Sbjct: 15  RDTTQSDTDVIYPRDDPRASRSH-QNFGFMDPPPRYEQIFKRGGGTPSVITTREAP---- 69

Query: 620 RSVTAMLHEVGLADAQEHPAELHAATAQRPPRPASGSSETPLGSLDRTKVSLGDSEQT 447
            SVT    +  L  + E  A L+A    RP  P     E PL ++D    ++     T
Sbjct: 70  -SVTRSTGDGSLPPSYEQAA-LNARRESRPQLPQGTLREVPLTAIDMEHPAMSTPSST 125


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 620 RSVTAMLHEVGLADAQEHPAELHAATAQRPPRPASGSSETPLGSLDR 480
           +S  A  H V L   Q HP      + QR PR +  S + P  +L R
Sbjct: 21  KSENAHSHRVVLNQLQNHPPRNATQSPQRQPRTSESSMDFPRSALRR 67


>AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical
           protein Y76B12C.4 protein.
          Length = 252

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
 Frame = -1

Query: 779 TEITMALPDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAML 600
           +EI    P+ +   + VP   R+  P    +   K   +E  +   E+ K+ E+  T   
Sbjct: 30  SEIDDWAPEKKKRAKKVPSKPREG-PKLIDEFEEKE--SEKEAAEKEKEKEKEKEKT--- 83

Query: 599 HEVGLADAQEHPAELHAATAQRPPRPASGSSETPL-GSLDRTKVSLGDS---EQTTDSKR 432
           HE   AD +E  AE      ++PP+  +   E        +TK  L ++   ++T + K+
Sbjct: 84  HEKNEADKEEKEAEKEEEKEEKPPKEVTEEKEKEKEREKTKTKDELEEAPREKETMEKKQ 143

Query: 431 FIRDQWGTEGTMIKILKHIKA 369
             +D+   + +  +ILK  KA
Sbjct: 144 KSKDEDEGDLSKEEILKIKKA 164


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = -1

Query: 722  FGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
            +GR+      K+ +          I N Q   ++  +  ++H+  L    +  A +  + 
Sbjct: 819  YGRKIHDQQGKEIQSSEKSHRQWVIENTQVSFNQAELLQLIHDHLLKSKLDSVAAMLKSE 878

Query: 542  AQRPPRPASGSSETPL 495
            A+ P RPAS S  TP+
Sbjct: 879  AKLPDRPASRSINTPI 894


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = -1

Query: 722  FGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAAT 543
            +GR+      K+ +          I N Q   ++  +  ++H+  L    +  A +  + 
Sbjct: 819  YGRKIHDQQGKEIQSSEKSHRQWVIENTQVSFNQAELLQLIHDHLLKSKLDSVAAMLKSE 878

Query: 542  AQRPPRPASGSSETPL 495
            A+ P RPAS S  TP+
Sbjct: 879  AKLPDRPASRSINTPI 894


>AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 551 AATAQRPPRPASGSSETP 498
           + + QRPP P SGSS TP
Sbjct: 2   STSTQRPPAPTSGSSSTP 19


>AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical
           protein T06A4.2 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 551 AATAQRPPRPASGSSETP 498
           + + QRPP P SGSS TP
Sbjct: 2   STSTQRPPAPTSGSSSTP 19


>Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical
           protein F46B3.11 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 207 YYVRIKV*VNFLIKEILYTILFSC*VDTEYCITLNVLLKQFIDVR*FVMSMTIFNFIVTV 28
           +Y  IK     LI  I++  +F+      Y I L VLL  ++      +   + NF V++
Sbjct: 61  FYKIIKALTRSLICFIVFLTVFNHTTSKYYFIQLPVLLITWLSFSVLTIFTQVCNFFVSL 120

Query: 27  CILYFYC 7
             +Y +C
Sbjct: 121 VAIYKFC 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,640,992
Number of Sequences: 27780
Number of extensions: 382316
Number of successful extensions: 1151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)