Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a03
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...   122   9e-29
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   1.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   1.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.4  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score =  122 bits (293), Expect = 9e-29
 Identities = 59/83 (71%), Positives = 68/83 (81%)
 Frame = -3

Query: 827 IKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKL 648
           I+V+++G I D KFKTFGCGSAIASSS  T  VKG T++EA K+KNT IAKEL LPPVKL
Sbjct: 96  IRVNKDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKL 155

Query: 647 HCSMLAEDAIKAALSDYRIKQQT 579
           HCSMLAEDAIK+A+  YR KQ T
Sbjct: 156 HCSMLAEDAIKSAVKHYRSKQLT 178


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 673 SLAISVFFN-FSASSTVFPLTHSVARELEAIAEPHPKVLNLAS 798
           +L +S F +   A+  V P+ H V   L   A+PHP++  LAS
Sbjct: 763 TLVVSSFISHIVAAMVVLPIVHEVGSRL---ADPHPRLFVLAS 802


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 685 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTLICTS 837
           SVF     ++ +F L+ S   +L    EPH ++++  S  FP+ S  I  S
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKS 295


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 806 KIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 696
           K V  +F T G  S I ++ ++    KGK +DEAL+L
Sbjct: 597 KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRL 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,480
Number of Sequences: 5004
Number of extensions: 62165
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)