Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte11a03
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633    134   6e-32
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577    130   1e-30
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579     29   3.6  
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726...    28   8.3  
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519...    28   8.3  

>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
          Length = 171

 Score =  134 bits (325), Expect = 6e-32
 Identities = 64/85 (75%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
 Frame = -3

Query: 836 EVQIKVDEN-GKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLP 660
           ++QI+VDE+ GKIVDA FKTFGCGSAIASSS+ATEWVKGK ++E + +KNT+IAK LSLP
Sbjct: 73  KLQIRVDESSGKIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKHLSLP 132

Query: 659 PVKLHCSMLAEDAIKAALSDYRIKQ 585
           PVKLHCSMLAEDAIKAA+ DY  K+
Sbjct: 133 PVKLHCSMLAEDAIKAAVKDYEAKK 157


>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
          Length = 172

 Score =  130 bits (315), Expect = 1e-30
 Identities = 62/90 (68%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
 Frame = -3

Query: 836 EVQIKVDE-NGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLP 660
           ++QI+VDE +G+IVDA FKTFGCGSAIASSS+A+EWVKGK +++A  +KN++IAK LSLP
Sbjct: 80  KLQIRVDEESGRIVDACFKTFGCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLP 139

Query: 659 PVKLHCSMLAEDAIKAALSDYRIKQQTENK 570
           PVKLHCSMLAEDAIKAA+ DY  K+   +K
Sbjct: 140 PVKLHCSMLAEDAIKAAVKDYEAKKAKLDK 169


>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
          Length = 234

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 661 GKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 780
           G ++ L       +   +TV+P  H   REL  I + HPK
Sbjct: 7   GSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPK 46


>04_04_1528 +
           34172149-34172233,34172335-34172414,34172621-34172689,
           34172780-34172837,34173296-34173357,34173441-34173554,
           34173862-34173964,34174085-34174134,34174335-34174724,
           34174918-34175244,34175360-34175689
          Length = 555

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 4   INKLIIGHEVIYPTTFLTYYNNSTFQILHLLTNIFLWLLDKINNCKNRKNQKQSFQTI 177
           + ++ IG++VI+P +F   Y N++  ++ L  +  L   +    C +  N K   +T+
Sbjct: 358 VMRVYIGYDVIFPRSFTFTYGNASINLMVLQRSHNLTTDNSKLTCDSSFNDKPIRETV 415


>02_04_0314 -
           21950400-21950639,21951384-21951680,21951791-21951920,
           21952377-21952699,21953385-21953606,21953693-21954089,
           21954488-21954540
          Length = 553

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 692 NTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQTEN 573
           + D+A    LPP  + C ++ ED   A L   R+  + EN
Sbjct: 282 SVDLAMLAGLPPAAVLCEIVDEDGSMARLPKLRVFAEREN 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,647,046
Number of Sequences: 37544
Number of extensions: 295912
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)